Gene : Seita.5G455200 S. italica v2.2
Defline:  (1 of 1) PTHR22870//PTHR22870:SF212 - REGULATOR OF CHROMOSOME CONDENSATION Genomic Order:  4552
Name:  ? Seita.5G455200 Secondary Identifier:  ? PAC:32683914
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G455200 0.5kb upstream 0.5kb upstream 8482 true scaffold_5: 46410361-46418842 Setaria italica
Seita.5G455200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46418343-46418842 Setaria italica
Seita.5G455200 0.5kb downstream 0.5kb downstream 8482 true scaffold_5: 46409861-46418342 Setaria italica
Seita.5G455200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46409861-46410360 Setaria italica
Seita.5G455200 1.0kb upstream 1.0kb upstream 8982 true scaffold_5: 46410361-46419342 Setaria italica
Seita.5G455200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46418343-46419342 Setaria italica
Seita.5G455200 1.0kb downstream 1.0kb downstream 8982 true scaffold_5: 46409361-46418342 Setaria italica
Seita.5G455200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46409361-46410360 Setaria italica
Seita.5G455200 2.0kb upstream 2.0kb upstream 9982 true scaffold_5: 46410361-46420342 Setaria italica
Seita.5G455200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46418343-46420342 Setaria italica
Seita.5G455200 2.0kb downstream 2.0kb downstream 9982 true scaffold_5: 46408361-46418342 Setaria italica
Seita.5G455200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46408361-46410360 Setaria italica
Seita.5G455200 5.0kb upstream 5.0kb upstream 12982 true scaffold_5: 46410361-46423342 Setaria italica
Seita.5G455200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46418343-46423342 Setaria italica
Seita.5G455200 5.0kb downstream 5.0kb downstream 12982 true scaffold_5: 46405361-46418342 Setaria italica
Seita.5G455200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46405361-46410360 Setaria italica
Seita.5G455200 10.0kb upstream 10.0kb upstream 17982 true scaffold_5: 46410361-46428342 Setaria italica
Seita.5G455200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46418343-46428342 Setaria italica
Seita.5G455200 10.0kb downstream 10.0kb downstream 17982 true scaffold_5: 46400361-46418342 Setaria italica
Seita.5G455200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46400361-46410360 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177158 5267 Panicoideae View MSA
124570980 5269 Grass View MSA
122045930 5273 Angiosperm View MSA
121350863 5274 Embryophyte View MSA
123428657 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.691     High High
cufflinks 22.21     High High
cufflinks 9.934        
cufflinks 9.4       Low
cufflinks 9.688       Low
cufflinks 21.619     High High
cufflinks 17.62     High  
cufflinks 9.703       Low
cufflinks 11.834        
cufflinks 9.358       Low
cufflinks 19.045     High  
cufflinks 15.346     High  
cufflinks 14.083     High  
cufflinks 7.811       Low
cufflinks 18.139     High  
cufflinks 20.538     High High
cufflinks 13.711        
cufflinks 21.735     High High
cufflinks 9.03       Low
cufflinks 16.03     High  

0 Strain