Gene : Seita.5G459200 S. italica v2.2
Defline:  (1 of 1) PTHR21576:SF19 - ARM REPEAT SUPERFAMILY PROTEIN Genomic Order:  4592
Name:  ? Seita.5G459200 Secondary Identifier:  ? PAC:32683578
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G459200 0.5kb upstream 0.5kb upstream 9332 true scaffold_5: 46688167-46697498 Setaria italica
Seita.5G459200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46688167-46688666 Setaria italica
Seita.5G459200 0.5kb downstream 0.5kb downstream 9332 true scaffold_5: 46688667-46697998 Setaria italica
Seita.5G459200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46697499-46697998 Setaria italica
Seita.5G459200 1.0kb upstream 1.0kb upstream 9832 true scaffold_5: 46687667-46697498 Setaria italica
Seita.5G459200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46687667-46688666 Setaria italica
Seita.5G459200 1.0kb downstream 1.0kb downstream 9832 true scaffold_5: 46688667-46698498 Setaria italica
Seita.5G459200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46697499-46698498 Setaria italica
Seita.5G459200 2.0kb upstream 2.0kb upstream 10832 true scaffold_5: 46686667-46697498 Setaria italica
Seita.5G459200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46686667-46688666 Setaria italica
Seita.5G459200 2.0kb downstream 2.0kb downstream 10832 true scaffold_5: 46688667-46699498 Setaria italica
Seita.5G459200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46697499-46699498 Setaria italica
Seita.5G459200 5.0kb upstream 5.0kb upstream 13832 true scaffold_5: 46683667-46697498 Setaria italica
Seita.5G459200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46683667-46688666 Setaria italica
Seita.5G459200 5.0kb downstream 5.0kb downstream 13832 true scaffold_5: 46688667-46702498 Setaria italica
Seita.5G459200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46697499-46702498 Setaria italica
Seita.5G459200 10.0kb upstream 10.0kb upstream 18832 true scaffold_5: 46678667-46697498 Setaria italica
Seita.5G459200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46678667-46688666 Setaria italica
Seita.5G459200 10.0kb downstream 10.0kb downstream 18832 true scaffold_5: 46688667-46707498 Setaria italica
Seita.5G459200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46697499-46707498 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175911 5267 Panicoideae View MSA
124584462 5269 Grass View MSA
122044020 5273 Angiosperm View MSA
121310227 5274 Embryophyte View MSA
123347775 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.532        
cufflinks 5.261       High
cufflinks 2.651        
cufflinks 1.439       Low
cufflinks 1.95       Low
cufflinks 6.627       High
cufflinks 3.149        
cufflinks 3.686        
cufflinks 4.033        
cufflinks 2.921        
cufflinks 4.168        
cufflinks 4.266        
cufflinks 3.109        
cufflinks 3.102        
cufflinks 4.743        
cufflinks 2.65        
cufflinks 4.89        
cufflinks 3.042        
cufflinks 1.132       Low
cufflinks 5.048        

0 Strain