Gene : Seita.5G462200 S. italica v2.2
Defline:  (1 of 1) KOG3483 - Uncharacterized conserved protein Genomic Order:  4622
Name:  ? Seita.5G462200 Secondary Identifier:  ? PAC:32683636
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G462200 0.5kb upstream 0.5kb upstream 2817 true scaffold_5: 46840296-46843112 Setaria italica
Seita.5G462200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46842613-46843112 Setaria italica
Seita.5G462200 0.5kb downstream 0.5kb downstream 2817 true scaffold_5: 46839796-46842612 Setaria italica
Seita.5G462200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46839796-46840295 Setaria italica
Seita.5G462200 1.0kb upstream 1.0kb upstream 3317 true scaffold_5: 46840296-46843612 Setaria italica
Seita.5G462200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46842613-46843612 Setaria italica
Seita.5G462200 1.0kb downstream 1.0kb downstream 3317 true scaffold_5: 46839296-46842612 Setaria italica
Seita.5G462200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46839296-46840295 Setaria italica
Seita.5G462200 2.0kb upstream 2.0kb upstream 4317 true scaffold_5: 46840296-46844612 Setaria italica
Seita.5G462200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46842613-46844612 Setaria italica
Seita.5G462200 2.0kb downstream 2.0kb downstream 4317 true scaffold_5: 46838296-46842612 Setaria italica
Seita.5G462200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46838296-46840295 Setaria italica
Seita.5G462200 5.0kb upstream 5.0kb upstream 7317 true scaffold_5: 46840296-46847612 Setaria italica
Seita.5G462200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46842613-46847612 Setaria italica
Seita.5G462200 5.0kb downstream 5.0kb downstream 7317 true scaffold_5: 46835296-46842612 Setaria italica
Seita.5G462200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46835296-46840295 Setaria italica
Seita.5G462200 10.0kb upstream 10.0kb upstream 12317 true scaffold_5: 46840296-46852612 Setaria italica
Seita.5G462200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46842613-46852612 Setaria italica
Seita.5G462200 10.0kb downstream 10.0kb downstream 12317 true scaffold_5: 46830296-46842612 Setaria italica
Seita.5G462200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46830296-46840295 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176675 5267 Panicoideae View MSA
124576989 5269 Grass View MSA
122045527 5273 Angiosperm View MSA
121349624 5274 Embryophyte View MSA
123424259 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.801        
cufflinks 16.782     High  
cufflinks 24.35     High  
cufflinks 30.412     High High
cufflinks 16.802     High  
cufflinks 17.831     High  
cufflinks 11.572        
cufflinks 25.061     High  
cufflinks 11.365        
cufflinks 25.839     High  
cufflinks 11.445        
cufflinks 18.826     High  
cufflinks 24.859     High  
cufflinks 30.435     High High
cufflinks 12.038        
cufflinks 9.768       Low
cufflinks 21.318     High  
cufflinks 7.497       Low
cufflinks 40.725     High High
cufflinks 19.965     High  

0 Strain