Gene : Seita.5G465100 S. italica v2.2
Defline:  (1 of 2) PTHR11384//PTHR11384:SF33 - ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER Genomic Order:  4651
Name:  ? Seita.5G465100 Secondary Identifier:  ? PAC:32683621
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G465100 0.5kb upstream 0.5kb upstream 10270 true scaffold_5: 46974251-46984520 Setaria italica
Seita.5G465100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46974251-46974750 Setaria italica
Seita.5G465100 0.5kb downstream 0.5kb downstream 10270 true scaffold_5: 46974751-46985020 Setaria italica
Seita.5G465100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46984521-46985020 Setaria italica
Seita.5G465100 1.0kb upstream 1.0kb upstream 10770 true scaffold_5: 46973751-46984520 Setaria italica
Seita.5G465100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46973751-46974750 Setaria italica
Seita.5G465100 1.0kb downstream 1.0kb downstream 10770 true scaffold_5: 46974751-46985520 Setaria italica
Seita.5G465100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46984521-46985520 Setaria italica
Seita.5G465100 2.0kb upstream 2.0kb upstream 11770 true scaffold_5: 46972751-46984520 Setaria italica
Seita.5G465100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46972751-46974750 Setaria italica
Seita.5G465100 2.0kb downstream 2.0kb downstream 11770 true scaffold_5: 46974751-46986520 Setaria italica
Seita.5G465100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46984521-46986520 Setaria italica
Seita.5G465100 5.0kb upstream 5.0kb upstream 14770 true scaffold_5: 46969751-46984520 Setaria italica
Seita.5G465100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46969751-46974750 Setaria italica
Seita.5G465100 5.0kb downstream 5.0kb downstream 14770 true scaffold_5: 46974751-46989520 Setaria italica
Seita.5G465100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46984521-46989520 Setaria italica
Seita.5G465100 10.0kb upstream 10.0kb upstream 19770 true scaffold_5: 46964751-46984520 Setaria italica
Seita.5G465100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46964751-46974750 Setaria italica
Seita.5G465100 10.0kb downstream 10.0kb downstream 19770 true scaffold_5: 46974751-46994520 Setaria italica
Seita.5G465100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46984521-46994520 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182285 5267 Panicoideae View MSA
124586419 5269 Grass View MSA
122046456 5273 Angiosperm View MSA
121348971 5274 Embryophyte View MSA
123424415 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.396     High  
cufflinks 9.541       Low
cufflinks 45.704     High High
cufflinks 36.897     High High
cufflinks 23.287     High  
cufflinks 9.571       Low
cufflinks 14.156     High  
cufflinks 12.99        
cufflinks 14.713     High  
cufflinks 6.077       Low
cufflinks 12.693        
cufflinks 17.22     High  
cufflinks 17.282     High  
cufflinks 27.431     High High
cufflinks 17.442     High  
cufflinks 14.452     High  
cufflinks 12.072        
cufflinks 27.83     High High
cufflinks 28.724     High High
cufflinks 12.933        

0 Strain