Gene : Seita.5G465200 S. italica v2.2
Defline:  (1 of 1) PTHR33219:SF1 - COFACTOR ASSEMBLY, COMPLEX C (B6F) Genomic Order:  4652
Name:  ? Seita.5G465200 Secondary Identifier:  ? PAC:32682129
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G465200 0.5kb upstream 0.5kb upstream 1480 true scaffold_5: 46984521-46986000 Setaria italica
Seita.5G465200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46985501-46986000 Setaria italica
Seita.5G465200 0.5kb downstream 0.5kb downstream 1480 true scaffold_5: 46984021-46985500 Setaria italica
Seita.5G465200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46984021-46984520 Setaria italica
Seita.5G465200 1.0kb upstream 1.0kb upstream 1980 true scaffold_5: 46984521-46986500 Setaria italica
Seita.5G465200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46985501-46986500 Setaria italica
Seita.5G465200 1.0kb downstream 1.0kb downstream 1980 true scaffold_5: 46983521-46985500 Setaria italica
Seita.5G465200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46983521-46984520 Setaria italica
Seita.5G465200 2.0kb upstream 2.0kb upstream 2980 true scaffold_5: 46984521-46987500 Setaria italica
Seita.5G465200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46985501-46987500 Setaria italica
Seita.5G465200 2.0kb downstream 2.0kb downstream 2980 true scaffold_5: 46982521-46985500 Setaria italica
Seita.5G465200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46982521-46984520 Setaria italica
Seita.5G465200 5.0kb upstream 5.0kb upstream 5980 true scaffold_5: 46984521-46990500 Setaria italica
Seita.5G465200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46985501-46990500 Setaria italica
Seita.5G465200 5.0kb downstream 5.0kb downstream 5980 true scaffold_5: 46979521-46985500 Setaria italica
Seita.5G465200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46979521-46984520 Setaria italica
Seita.5G465200 10.0kb upstream 10.0kb upstream 10980 true scaffold_5: 46984521-46995500 Setaria italica
Seita.5G465200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46985501-46995500 Setaria italica
Seita.5G465200 10.0kb downstream 10.0kb downstream 10980 true scaffold_5: 46974521-46985500 Setaria italica
Seita.5G465200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46974521-46984520 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199705 5267 Panicoideae View MSA
124574680 5269 Grass View MSA
122048332 5273 Angiosperm View MSA
121348595 5274 Embryophyte View MSA
123428591 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.813        
cufflinks 5.744        
cufflinks 4.788        
cufflinks 5.728        
cufflinks 15.823     High  
cufflinks 6.475        
cufflinks 17.655     High High
cufflinks 15.341     High  
cufflinks 34.45     High High
cufflinks 2.273        
cufflinks 2.536        
cufflinks 0.133       Low
cufflinks 0.272       Low
cufflinks 8.462        
cufflinks 0.072     Low Low
cufflinks 12.927     High  
cufflinks 0.075     Low Low
cufflinks 1.682        
cufflinks 2.11        
cufflinks 0.07     Low Low

0 Strain