Gene : Seita.6G082000 S. italica v2.2
Defline:  (1 of 1) PTHR34790:SF1 - PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC Genomic Order:  820
Name:  ? Seita.6G082000 Secondary Identifier:  ? PAC:32698675
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G082000 0.5kb upstream 0.5kb upstream 1587 true scaffold_6: 7330080-7331666 Setaria italica
Seita.6G082000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7330080-7330579 Setaria italica
Seita.6G082000 0.5kb downstream 0.5kb downstream 1587 true scaffold_6: 7330580-7332166 Setaria italica
Seita.6G082000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7331667-7332166 Setaria italica
Seita.6G082000 1.0kb upstream 1.0kb upstream 2087 true scaffold_6: 7329580-7331666 Setaria italica
Seita.6G082000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7329580-7330579 Setaria italica
Seita.6G082000 1.0kb downstream 1.0kb downstream 2087 true scaffold_6: 7330580-7332666 Setaria italica
Seita.6G082000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7331667-7332666 Setaria italica
Seita.6G082000 2.0kb upstream 2.0kb upstream 3087 true scaffold_6: 7328580-7331666 Setaria italica
Seita.6G082000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7328580-7330579 Setaria italica
Seita.6G082000 2.0kb downstream 2.0kb downstream 3087 true scaffold_6: 7330580-7333666 Setaria italica
Seita.6G082000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7331667-7333666 Setaria italica
Seita.6G082000 5.0kb upstream 5.0kb upstream 6087 true scaffold_6: 7325580-7331666 Setaria italica
Seita.6G082000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7325580-7330579 Setaria italica
Seita.6G082000 5.0kb downstream 5.0kb downstream 6087 true scaffold_6: 7330580-7336666 Setaria italica
Seita.6G082000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7331667-7336666 Setaria italica
Seita.6G082000 10.0kb upstream 10.0kb upstream 11087 true scaffold_6: 7320580-7331666 Setaria italica
Seita.6G082000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7320580-7330579 Setaria italica
Seita.6G082000 10.0kb downstream 10.0kb downstream 11087 true scaffold_6: 7330580-7341666 Setaria italica
Seita.6G082000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7331667-7341666 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175036 5267 Panicoideae View MSA
124579440 5269 Grass View MSA
122044260 5273 Angiosperm View MSA
121349394 5274 Embryophyte View MSA
123426328 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.208        
cufflinks 25.437     High  
cufflinks 127.915     High  
cufflinks 204.063     High  
cufflinks 208.357     High  
cufflinks 24.476     High  
cufflinks 113.445     High  
cufflinks 197.314     High  
cufflinks 125.052     High  
cufflinks 23.235     High  
cufflinks 6.591        
cufflinks 0.062     Low Low
cufflinks 0.587        
cufflinks 115.85     High  
cufflinks 0.031     Low Low
cufflinks 107.458     High  
cufflinks 0.329       Low
cufflinks 19.393     High  
cufflinks 183.083     High  
cufflinks 0.015     Low Low

0 Strain