Gene : Seita.6G079600 S. italica v2.2
Defline:  (1 of 1) PTHR10836//PTHR10836:SF58 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE Genomic Order:  796
Name:  ? Seita.6G079600 Secondary Identifier:  ? PAC:32700252
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ANAEROFRUCAT-PWY Setaria italica pathologic  
Sitalica ANAGLYCOLYSIS-PWY Setaria italica pathologic  
Sitalica GLUCONEO-PWY Setaria italica pathologic  
Sitalica PWY-1042 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica SUCSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G079600 0.5kb upstream 0.5kb upstream 4383 true scaffold_6: 7158844-7163226 Setaria italica
Seita.6G079600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7162727-7163226 Setaria italica
Seita.6G079600 0.5kb downstream 0.5kb downstream 4383 true scaffold_6: 7158344-7162726 Setaria italica
Seita.6G079600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7158344-7158843 Setaria italica
Seita.6G079600 1.0kb upstream 1.0kb upstream 4883 true scaffold_6: 7158844-7163726 Setaria italica
Seita.6G079600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7162727-7163726 Setaria italica
Seita.6G079600 1.0kb downstream 1.0kb downstream 4883 true scaffold_6: 7157844-7162726 Setaria italica
Seita.6G079600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7157844-7158843 Setaria italica
Seita.6G079600 2.0kb upstream 2.0kb upstream 5883 true scaffold_6: 7158844-7164726 Setaria italica
Seita.6G079600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7162727-7164726 Setaria italica
Seita.6G079600 2.0kb downstream 2.0kb downstream 5883 true scaffold_6: 7156844-7162726 Setaria italica
Seita.6G079600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7156844-7158843 Setaria italica
Seita.6G079600 5.0kb upstream 5.0kb upstream 8883 true scaffold_6: 7158844-7167726 Setaria italica
Seita.6G079600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7162727-7167726 Setaria italica
Seita.6G079600 5.0kb downstream 5.0kb downstream 8883 true scaffold_6: 7153844-7162726 Setaria italica
Seita.6G079600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7153844-7158843 Setaria italica
Seita.6G079600 10.0kb upstream 10.0kb upstream 13883 true scaffold_6: 7158844-7172726 Setaria italica
Seita.6G079600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7162727-7172726 Setaria italica
Seita.6G079600 10.0kb downstream 10.0kb downstream 13883 true scaffold_6: 7148844-7162726 Setaria italica
Seita.6G079600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7148844-7158843 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195561 5267 Panicoideae View MSA
124589376 5269 Grass View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 587.593     High  
cufflinks 542.852     High  
cufflinks 224.798     High Low
cufflinks 216.531     High Low
cufflinks 424.513     High  
cufflinks 474.536     High  
cufflinks 907.233     High High
cufflinks 637.686     High  
cufflinks 787.64     High High
cufflinks 593.712     High  
cufflinks 609.483     High  
cufflinks 619.197     High  
cufflinks 545.803     High  
cufflinks 398.113     High  
cufflinks 611.033     High  
cufflinks 430.229     High  
cufflinks 766.478     High  
cufflinks 260.965     High Low
cufflinks 855.859     High High
cufflinks 616.281     High  

0 Strain