Gene : Seita.6G100400 S. italica v2.2
Defline:  (1 of 1) PTHR12069 - DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5 Genomic Order:  1004
Name:  ? Seita.6G100400 Secondary Identifier:  ? PAC:32701618
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G100400 0.5kb upstream 0.5kb upstream 15323 true scaffold_6: 11408443-11423765 Setaria italica
Seita.6G100400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 11423266-11423765 Setaria italica
Seita.6G100400 0.5kb downstream 0.5kb downstream 15323 true scaffold_6: 11407943-11423265 Setaria italica
Seita.6G100400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 11407943-11408442 Setaria italica
Seita.6G100400 1.0kb upstream 1.0kb upstream 15823 true scaffold_6: 11408443-11424265 Setaria italica
Seita.6G100400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 11423266-11424265 Setaria italica
Seita.6G100400 1.0kb downstream 1.0kb downstream 15823 true scaffold_6: 11407443-11423265 Setaria italica
Seita.6G100400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 11407443-11408442 Setaria italica
Seita.6G100400 2.0kb upstream 2.0kb upstream 16823 true scaffold_6: 11408443-11425265 Setaria italica
Seita.6G100400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 11423266-11425265 Setaria italica
Seita.6G100400 2.0kb downstream 2.0kb downstream 16823 true scaffold_6: 11406443-11423265 Setaria italica
Seita.6G100400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 11406443-11408442 Setaria italica
Seita.6G100400 5.0kb upstream 5.0kb upstream 19823 true scaffold_6: 11408443-11428265 Setaria italica
Seita.6G100400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 11423266-11428265 Setaria italica
Seita.6G100400 5.0kb downstream 5.0kb downstream 19823 true scaffold_6: 11403443-11423265 Setaria italica
Seita.6G100400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 11403443-11408442 Setaria italica
Seita.6G100400 10.0kb upstream 10.0kb upstream 24823 true scaffold_6: 11408443-11433265 Setaria italica
Seita.6G100400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 11423266-11433265 Setaria italica
Seita.6G100400 10.0kb downstream 10.0kb downstream 24823 true scaffold_6: 11398443-11423265 Setaria italica
Seita.6G100400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 11398443-11408442 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182819 5267 Panicoideae View MSA
124580329 5269 Grass View MSA
122041798 5273 Angiosperm View MSA
123429138 5275 Viridiplantae View MSA
121344108 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.332        
cufflinks 1.664       High
cufflinks 2.05       High
cufflinks 1.742       High
cufflinks 1.287        
cufflinks 2.074       High
cufflinks 1.367        
cufflinks 1.129        
cufflinks 1.198        
cufflinks 0.787       Low
cufflinks 1.188        
cufflinks 1.209        
cufflinks 1.091        
cufflinks 1.549        
cufflinks 1.11        
cufflinks 1.439        
cufflinks 1.157        
cufflinks 1.402        
cufflinks 1.21        
cufflinks 1.163        

0 Strain