Gene : Seita.6G113200 S. italica v2.2
Defline:  (1 of 1) 6.3.5.2 - GMP synthase (glutamine-hydrolyzing) / GMP synthetase (glutamine-hydrolyzing) Genomic Order:  1132
Name:  ? Seita.6G113200 Secondary Identifier:  ? PAC:32701089
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CITRULBIO-PWY Setaria italica pathologic  
Sitalica GLUTAMINDEG-PWY Setaria italica pathologic  
Sitalica PWY-7221 Setaria italica pathologic  
Sitalica PWY-7228 Setaria italica pathologic  
Sitalica PWY-841 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G113200 0.5kb upstream 0.5kb upstream 4088 true scaffold_6: 18269106-18273193 Setaria italica
Seita.6G113200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 18269106-18269605 Setaria italica
Seita.6G113200 0.5kb downstream 0.5kb downstream 4088 true scaffold_6: 18269606-18273693 Setaria italica
Seita.6G113200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 18273194-18273693 Setaria italica
Seita.6G113200 1.0kb upstream 1.0kb upstream 4588 true scaffold_6: 18268606-18273193 Setaria italica
Seita.6G113200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 18268606-18269605 Setaria italica
Seita.6G113200 1.0kb downstream 1.0kb downstream 4588 true scaffold_6: 18269606-18274193 Setaria italica
Seita.6G113200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 18273194-18274193 Setaria italica
Seita.6G113200 2.0kb upstream 2.0kb upstream 5588 true scaffold_6: 18267606-18273193 Setaria italica
Seita.6G113200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 18267606-18269605 Setaria italica
Seita.6G113200 2.0kb downstream 2.0kb downstream 5588 true scaffold_6: 18269606-18275193 Setaria italica
Seita.6G113200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 18273194-18275193 Setaria italica
Seita.6G113200 5.0kb upstream 5.0kb upstream 8588 true scaffold_6: 18264606-18273193 Setaria italica
Seita.6G113200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 18264606-18269605 Setaria italica
Seita.6G113200 5.0kb downstream 5.0kb downstream 8588 true scaffold_6: 18269606-18278193 Setaria italica
Seita.6G113200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 18273194-18278193 Setaria italica
Seita.6G113200 10.0kb upstream 10.0kb upstream 13588 true scaffold_6: 18259606-18273193 Setaria italica
Seita.6G113200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 18259606-18269605 Setaria italica
Seita.6G113200 10.0kb downstream 10.0kb downstream 13588 true scaffold_6: 18269606-18283193 Setaria italica
Seita.6G113200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 18273194-18283193 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191330 5267 Panicoideae View MSA
124579776 5269 Grass View MSA
122049121 5273 Angiosperm View MSA
121346337 5274 Embryophyte View MSA
123424284 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.2     High  
cufflinks 28.604     High  
cufflinks 9.634       Low
cufflinks 4.163       Low
cufflinks 7.966       Low
cufflinks 31.313     High  
cufflinks 23.74     High  
cufflinks 24.914     High  
cufflinks 35.153     High  
cufflinks 36.249     High  
cufflinks 30.692     High  
cufflinks 31.274     High  
cufflinks 19.352     High  
cufflinks 21.3     High  
cufflinks 31.527     High  
cufflinks 15.623     High  
cufflinks 44.69     High High
cufflinks 16.861     High  
cufflinks 5.684       Low
cufflinks 36.826     High  

0 Strain