Gene : Seita.6G118400 S. italica v2.2
Defline:  (1 of 1) PTHR10625:SF109 - HISTONE DEACETYLASE 2 Genomic Order:  1184
Name:  ? Seita.6G118400 Secondary Identifier:  ? PAC:32700687
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G118400 0.5kb upstream 0.5kb upstream 5014 true scaffold_6: 19823670-19828683 Setaria italica
Seita.6G118400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 19828184-19828683 Setaria italica
Seita.6G118400 0.5kb downstream 0.5kb downstream 5014 true scaffold_6: 19823170-19828183 Setaria italica
Seita.6G118400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 19823170-19823669 Setaria italica
Seita.6G118400 1.0kb upstream 1.0kb upstream 5514 true scaffold_6: 19823670-19829183 Setaria italica
Seita.6G118400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 19828184-19829183 Setaria italica
Seita.6G118400 1.0kb downstream 1.0kb downstream 5514 true scaffold_6: 19822670-19828183 Setaria italica
Seita.6G118400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 19822670-19823669 Setaria italica
Seita.6G118400 2.0kb upstream 2.0kb upstream 6514 true scaffold_6: 19823670-19830183 Setaria italica
Seita.6G118400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 19828184-19830183 Setaria italica
Seita.6G118400 2.0kb downstream 2.0kb downstream 6514 true scaffold_6: 19821670-19828183 Setaria italica
Seita.6G118400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 19821670-19823669 Setaria italica
Seita.6G118400 5.0kb upstream 5.0kb upstream 9514 true scaffold_6: 19823670-19833183 Setaria italica
Seita.6G118400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 19828184-19833183 Setaria italica
Seita.6G118400 5.0kb downstream 5.0kb downstream 9514 true scaffold_6: 19818670-19828183 Setaria italica
Seita.6G118400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 19818670-19823669 Setaria italica
Seita.6G118400 10.0kb upstream 10.0kb upstream 14514 true scaffold_6: 19823670-19838183 Setaria italica
Seita.6G118400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 19828184-19838183 Setaria italica
Seita.6G118400 10.0kb downstream 10.0kb downstream 14514 true scaffold_6: 19813670-19828183 Setaria italica
Seita.6G118400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 19813670-19823669 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181402 5267 Panicoideae View MSA
124573980 5269 Grass View MSA
122043471 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.611        
cufflinks 7.243       High
cufflinks 4.811       Low
cufflinks 5.208        
cufflinks 4.955        
cufflinks 7.77       High
cufflinks 5.723        
cufflinks 5.756        
cufflinks 4.792       Low
cufflinks 5.452        
cufflinks 5.247        
cufflinks 5.847        
cufflinks 6.479        
cufflinks 4.725       Low
cufflinks 7.083       High
cufflinks 5.85        
cufflinks 7.632       High
cufflinks 4.966        
cufflinks 4.744       Low
cufflinks 6.813        

0 Strain