Gene : Seita.6G050500 S. italica v2.2
Defline:  (1 of 1) PTHR11785:SF338 - POLYAMINE TRANSPORTER RMV1 Genomic Order:  505
Name:  ? Seita.6G050500 Secondary Identifier:  ? PAC:32698845
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G050500 0.5kb upstream 0.5kb upstream 4042 true scaffold_6: 3937520-3941561 Setaria italica
Seita.6G050500 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 3941062-3941561 Setaria italica
Seita.6G050500 0.5kb downstream 0.5kb downstream 4042 true scaffold_6: 3937020-3941061 Setaria italica
Seita.6G050500 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 3937020-3937519 Setaria italica
Seita.6G050500 1.0kb upstream 1.0kb upstream 4542 true scaffold_6: 3937520-3942061 Setaria italica
Seita.6G050500 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 3941062-3942061 Setaria italica
Seita.6G050500 1.0kb downstream 1.0kb downstream 4542 true scaffold_6: 3936520-3941061 Setaria italica
Seita.6G050500 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 3936520-3937519 Setaria italica
Seita.6G050500 2.0kb upstream 2.0kb upstream 5542 true scaffold_6: 3937520-3943061 Setaria italica
Seita.6G050500 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 3941062-3943061 Setaria italica
Seita.6G050500 2.0kb downstream 2.0kb downstream 5542 true scaffold_6: 3935520-3941061 Setaria italica
Seita.6G050500 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 3935520-3937519 Setaria italica
Seita.6G050500 5.0kb upstream 5.0kb upstream 8542 true scaffold_6: 3937520-3946061 Setaria italica
Seita.6G050500 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 3941062-3946061 Setaria italica
Seita.6G050500 5.0kb downstream 5.0kb downstream 8542 true scaffold_6: 3932520-3941061 Setaria italica
Seita.6G050500 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 3932520-3937519 Setaria italica
Seita.6G050500 10.0kb upstream 10.0kb upstream 13542 true scaffold_6: 3937520-3951061 Setaria italica
Seita.6G050500 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 3941062-3951061 Setaria italica
Seita.6G050500 10.0kb downstream 10.0kb downstream 13542 true scaffold_6: 3927520-3941061 Setaria italica
Seita.6G050500 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 3927520-3937519 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181524 5267 Panicoideae View MSA
124570310 5269 Grass View MSA
122043396 5273 Angiosperm View MSA
121345389 5274 Embryophyte View MSA
123424636 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.044     High  
cufflinks 14.92     High  
cufflinks 8.842       Low
cufflinks 8.797       Low
cufflinks 8.111       Low
cufflinks 14.003     High  
cufflinks 9.559        
cufflinks 10.529        
cufflinks 12.537     High  
cufflinks 17.05     High  
cufflinks 21.066     High High
cufflinks 9.156        
cufflinks 21.312     High High
cufflinks 21.049     High High
cufflinks 15.308     High  
cufflinks 7.772       Low
cufflinks 12.466        
cufflinks 10.331        
cufflinks 14.837     High  
cufflinks 12.306        

0 Strain