Gene : Seita.6G050900 S. italica v2.2
Defline:  (1 of 6) PTHR17130 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 Genomic Order:  509
Name:  ? Seita.6G050900 Secondary Identifier:  ? PAC:32700912
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G050900 0.5kb upstream 0.5kb upstream 2641 true scaffold_6: 3954205-3956845 Setaria italica
Seita.6G050900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 3956346-3956845 Setaria italica
Seita.6G050900 0.5kb downstream 0.5kb downstream 2641 true scaffold_6: 3953705-3956345 Setaria italica
Seita.6G050900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 3953705-3954204 Setaria italica
Seita.6G050900 1.0kb upstream 1.0kb upstream 3141 true scaffold_6: 3954205-3957345 Setaria italica
Seita.6G050900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 3956346-3957345 Setaria italica
Seita.6G050900 1.0kb downstream 1.0kb downstream 3141 true scaffold_6: 3953205-3956345 Setaria italica
Seita.6G050900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 3953205-3954204 Setaria italica
Seita.6G050900 2.0kb upstream 2.0kb upstream 4141 true scaffold_6: 3954205-3958345 Setaria italica
Seita.6G050900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 3956346-3958345 Setaria italica
Seita.6G050900 2.0kb downstream 2.0kb downstream 4141 true scaffold_6: 3952205-3956345 Setaria italica
Seita.6G050900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 3952205-3954204 Setaria italica
Seita.6G050900 5.0kb upstream 5.0kb upstream 7141 true scaffold_6: 3954205-3961345 Setaria italica
Seita.6G050900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 3956346-3961345 Setaria italica
Seita.6G050900 5.0kb downstream 5.0kb downstream 7141 true scaffold_6: 3949205-3956345 Setaria italica
Seita.6G050900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 3949205-3954204 Setaria italica
Seita.6G050900 10.0kb upstream 10.0kb upstream 12141 true scaffold_6: 3954205-3966345 Setaria italica
Seita.6G050900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 3956346-3966345 Setaria italica
Seita.6G050900 10.0kb downstream 10.0kb downstream 12141 true scaffold_6: 3944205-3956345 Setaria italica
Seita.6G050900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 3944205-3954204 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181231 5267 Panicoideae View MSA
124569941 5269 Grass View MSA
122043639 5273 Angiosperm View MSA
121349762 5274 Embryophyte View MSA
123424471 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.456        
cufflinks 14.59     High  
cufflinks 80.454     High  
cufflinks 128.175     High  
cufflinks 178.962     High High
cufflinks 8.776        
cufflinks 62.915     High  
cufflinks 135.672     High  
cufflinks 95.6     High  
cufflinks 1.584        
cufflinks 1.461        
cufflinks 0.04     Low Low
cufflinks 0.373        
cufflinks 54.488     High  
cufflinks 0.075     Low Low
cufflinks 113.03     High  
cufflinks 0.034     Low Low
cufflinks 3.408        
cufflinks 291.299     High High
cufflinks 0.008     Low Low

0 Strain