Gene : Seita.6G059400 S. italica v2.2
Defline:  (1 of 1) PTHR10509:SF27 - PROTEIN COMT-1 Genomic Order:  594
Name:  ? Seita.6G059400 Secondary Identifier:  ? PAC:32700531
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-1121 Setaria italica pathologic  
Sitalica PWY-361 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G059400 0.5kb upstream 0.5kb upstream 3978 true scaffold_6: 4830752-4834729 Setaria italica
Seita.6G059400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4834230-4834729 Setaria italica
Seita.6G059400 0.5kb downstream 0.5kb downstream 3978 true scaffold_6: 4830252-4834229 Setaria italica
Seita.6G059400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4830252-4830751 Setaria italica
Seita.6G059400 1.0kb upstream 1.0kb upstream 4478 true scaffold_6: 4830752-4835229 Setaria italica
Seita.6G059400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4834230-4835229 Setaria italica
Seita.6G059400 1.0kb downstream 1.0kb downstream 4478 true scaffold_6: 4829752-4834229 Setaria italica
Seita.6G059400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4829752-4830751 Setaria italica
Seita.6G059400 2.0kb upstream 2.0kb upstream 5478 true scaffold_6: 4830752-4836229 Setaria italica
Seita.6G059400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4834230-4836229 Setaria italica
Seita.6G059400 2.0kb downstream 2.0kb downstream 5478 true scaffold_6: 4828752-4834229 Setaria italica
Seita.6G059400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4828752-4830751 Setaria italica
Seita.6G059400 5.0kb upstream 5.0kb upstream 8478 true scaffold_6: 4830752-4839229 Setaria italica
Seita.6G059400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4834230-4839229 Setaria italica
Seita.6G059400 5.0kb downstream 5.0kb downstream 8478 true scaffold_6: 4825752-4834229 Setaria italica
Seita.6G059400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4825752-4830751 Setaria italica
Seita.6G059400 10.0kb upstream 10.0kb upstream 13478 true scaffold_6: 4830752-4844229 Setaria italica
Seita.6G059400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4834230-4844229 Setaria italica
Seita.6G059400 10.0kb downstream 10.0kb downstream 13478 true scaffold_6: 4820752-4834229 Setaria italica
Seita.6G059400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4820752-4830751 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175186 5267 Panicoideae View MSA
124588740 5269 Grass View MSA
122046584 5273 Angiosperm View MSA
121345424 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.885        
cufflinks 0.933        
cufflinks 0.647        
cufflinks 0.381       Low
cufflinks 1.027        
cufflinks 0.916        
cufflinks 1.497       High
cufflinks 2.309       High
cufflinks 2.616       High
cufflinks 0.575        
cufflinks 0.635        
cufflinks 0.496        
cufflinks 0.424       Low
cufflinks 0.922        
cufflinks 0.419       Low
cufflinks 1.27        
cufflinks 0.596        
cufflinks 0.713        
cufflinks 0.443        
cufflinks 0.414       Low

0 Strain