Gene : Seita.6G072900 S. italica v2.2
Defline:  (1 of 1) PTHR10314:SF98 - TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED Genomic Order:  729
Name:  ? Seita.6G072900 Secondary Identifier:  ? PAC:32701439
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4161 Setaria italica pathologic  
Sitalica PWY-6949 Setaria italica pathologic  
Sitalica TRPSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G072900 0.5kb upstream 0.5kb upstream 3731 true scaffold_6: 6493373-6497103 Setaria italica
Seita.6G072900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6496604-6497103 Setaria italica
Seita.6G072900 0.5kb downstream 0.5kb downstream 3731 true scaffold_6: 6492873-6496603 Setaria italica
Seita.6G072900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6492873-6493372 Setaria italica
Seita.6G072900 1.0kb upstream 1.0kb upstream 4231 true scaffold_6: 6493373-6497603 Setaria italica
Seita.6G072900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6496604-6497603 Setaria italica
Seita.6G072900 1.0kb downstream 1.0kb downstream 4231 true scaffold_6: 6492373-6496603 Setaria italica
Seita.6G072900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6492373-6493372 Setaria italica
Seita.6G072900 2.0kb upstream 2.0kb upstream 5231 true scaffold_6: 6493373-6498603 Setaria italica
Seita.6G072900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6496604-6498603 Setaria italica
Seita.6G072900 2.0kb downstream 2.0kb downstream 5231 true scaffold_6: 6491373-6496603 Setaria italica
Seita.6G072900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6491373-6493372 Setaria italica
Seita.6G072900 5.0kb upstream 5.0kb upstream 8231 true scaffold_6: 6493373-6501603 Setaria italica
Seita.6G072900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6496604-6501603 Setaria italica
Seita.6G072900 5.0kb downstream 5.0kb downstream 8231 true scaffold_6: 6488373-6496603 Setaria italica
Seita.6G072900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6488373-6493372 Setaria italica
Seita.6G072900 10.0kb upstream 10.0kb upstream 13231 true scaffold_6: 6493373-6506603 Setaria italica
Seita.6G072900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6496604-6506603 Setaria italica
Seita.6G072900 10.0kb downstream 10.0kb downstream 13231 true scaffold_6: 6483373-6496603 Setaria italica
Seita.6G072900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6483373-6493372 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191160 5267 Panicoideae View MSA
124577172 5269 Grass View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 61.822     High  
cufflinks 32.412     High  
cufflinks 24.505     High Low
cufflinks 31.075     High  
cufflinks 43.205     High  
cufflinks 30.931     High Low
cufflinks 24.839     High Low
cufflinks 63.471     High  
cufflinks 59.323     High  
cufflinks 87.651     High High
cufflinks 54.72     High  
cufflinks 101.011     High High
cufflinks 62.565     High  
cufflinks 32.249     High  
cufflinks 45.46     High  
cufflinks 39.792     High  
cufflinks 84.718     High High
cufflinks 35.391     High  
cufflinks 43.873     High  
cufflinks 79.298     High High

0 Strain