Gene : Seita.6G074200 S. italica v2.2
Defline:  (1 of 1) PTHR22807:SF16 - S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE DOMAIN-CONTAINING PROTEIN Genomic Order:  742
Name:  ? Seita.6G074200 Secondary Identifier:  ? PAC:32701118
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G074200 0.5kb upstream 0.5kb upstream 7210 true scaffold_6: 6562119-6569328 Setaria italica
Seita.6G074200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6562119-6562618 Setaria italica
Seita.6G074200 0.5kb downstream 0.5kb downstream 7210 true scaffold_6: 6562619-6569828 Setaria italica
Seita.6G074200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6569329-6569828 Setaria italica
Seita.6G074200 1.0kb upstream 1.0kb upstream 7710 true scaffold_6: 6561619-6569328 Setaria italica
Seita.6G074200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6561619-6562618 Setaria italica
Seita.6G074200 1.0kb downstream 1.0kb downstream 7710 true scaffold_6: 6562619-6570328 Setaria italica
Seita.6G074200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6569329-6570328 Setaria italica
Seita.6G074200 2.0kb upstream 2.0kb upstream 8710 true scaffold_6: 6560619-6569328 Setaria italica
Seita.6G074200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6560619-6562618 Setaria italica
Seita.6G074200 2.0kb downstream 2.0kb downstream 8710 true scaffold_6: 6562619-6571328 Setaria italica
Seita.6G074200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6569329-6571328 Setaria italica
Seita.6G074200 5.0kb upstream 5.0kb upstream 11710 true scaffold_6: 6557619-6569328 Setaria italica
Seita.6G074200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6557619-6562618 Setaria italica
Seita.6G074200 5.0kb downstream 5.0kb downstream 11710 true scaffold_6: 6562619-6574328 Setaria italica
Seita.6G074200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6569329-6574328 Setaria italica
Seita.6G074200 10.0kb upstream 10.0kb upstream 16710 true scaffold_6: 6552619-6569328 Setaria italica
Seita.6G074200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6552619-6562618 Setaria italica
Seita.6G074200 10.0kb downstream 10.0kb downstream 16710 true scaffold_6: 6562619-6579328 Setaria italica
Seita.6G074200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6569329-6579328 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176270 5267 Panicoideae View MSA
124579315 5269 Grass View MSA
122044592 5273 Angiosperm View MSA
121346334 5274 Embryophyte View MSA
123425870 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.873       High
cufflinks 1.326        
cufflinks 1.527        
cufflinks 1.556        
cufflinks 1.082       Low
cufflinks 1.402        
cufflinks 1.575        
cufflinks 1.277        
cufflinks 1.088       Low
cufflinks 2.045        
cufflinks 1.803        
cufflinks 1.94        
cufflinks 1.952        
cufflinks 1.291        
cufflinks 1.313        
cufflinks 2.16        
cufflinks 1.895        
cufflinks 4.674       High
cufflinks 1.322        
cufflinks 1.557        

0 Strain