Gene : Seita.6G075100 S. italica v2.2
Defline:  (1 of 2) PTHR21141:SF3 - 60S ACIDIC RIBOSOMAL PROTEIN P0 Genomic Order:  751
Name:  ? Seita.6G075100 Secondary Identifier:  ? PAC:32699256
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G075100 0.5kb upstream 0.5kb upstream 2842 true scaffold_6: 6607099-6609940 Setaria italica
Seita.6G075100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6607099-6607598 Setaria italica
Seita.6G075100 0.5kb downstream 0.5kb downstream 2842 true scaffold_6: 6607599-6610440 Setaria italica
Seita.6G075100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6609941-6610440 Setaria italica
Seita.6G075100 1.0kb upstream 1.0kb upstream 3342 true scaffold_6: 6606599-6609940 Setaria italica
Seita.6G075100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6606599-6607598 Setaria italica
Seita.6G075100 1.0kb downstream 1.0kb downstream 3342 true scaffold_6: 6607599-6610940 Setaria italica
Seita.6G075100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6609941-6610940 Setaria italica
Seita.6G075100 2.0kb upstream 2.0kb upstream 4342 true scaffold_6: 6605599-6609940 Setaria italica
Seita.6G075100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6605599-6607598 Setaria italica
Seita.6G075100 2.0kb downstream 2.0kb downstream 4342 true scaffold_6: 6607599-6611940 Setaria italica
Seita.6G075100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6609941-6611940 Setaria italica
Seita.6G075100 5.0kb upstream 5.0kb upstream 7342 true scaffold_6: 6602599-6609940 Setaria italica
Seita.6G075100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6602599-6607598 Setaria italica
Seita.6G075100 5.0kb downstream 5.0kb downstream 7342 true scaffold_6: 6607599-6614940 Setaria italica
Seita.6G075100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6609941-6614940 Setaria italica
Seita.6G075100 10.0kb upstream 10.0kb upstream 12342 true scaffold_6: 6597599-6609940 Setaria italica
Seita.6G075100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6597599-6607598 Setaria italica
Seita.6G075100 10.0kb downstream 10.0kb downstream 12342 true scaffold_6: 6607599-6619940 Setaria italica
Seita.6G075100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6609941-6619940 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186739 5267 Panicoideae View MSA
124582376 5269 Grass View MSA
122042027 5273 Angiosperm View MSA
121345246 5274 Embryophyte View MSA
123428323 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 103.518     High  
cufflinks 171.301     High High
cufflinks 44.73     High Low
cufflinks 27.86     High Low
cufflinks 42.301     High Low
cufflinks 183.098     High High
cufflinks 110.14     High  
cufflinks 154.953     High  
cufflinks 165.305     High High
cufflinks 119.033     High  
cufflinks 131.949     High  
cufflinks 80.483     High  
cufflinks 84.783     High  
cufflinks 74.775     High  
cufflinks 131.529     High  
cufflinks 45.927     High Low
cufflinks 131.661     High  
cufflinks 43.849     High Low
cufflinks 53.465     High  
cufflinks 141.597     High  

0 Strain