Gene : Seita.6G077900 S. italica v2.2
Defline:  (1 of 2) PTHR33372:SF1 - CHLOROPLAST J-LIKE DOMAIN 1-CONTAINING PROTEIN Genomic Order:  779
Name:  ? Seita.6G077900 Secondary Identifier:  ? PAC:32700606
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G077900 0.5kb upstream 0.5kb upstream 4347 true scaffold_6: 6984400-6988746 Setaria italica
Seita.6G077900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6984400-6984899 Setaria italica
Seita.6G077900 0.5kb downstream 0.5kb downstream 4347 true scaffold_6: 6984900-6989246 Setaria italica
Seita.6G077900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6988747-6989246 Setaria italica
Seita.6G077900 1.0kb upstream 1.0kb upstream 4847 true scaffold_6: 6983900-6988746 Setaria italica
Seita.6G077900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6983900-6984899 Setaria italica
Seita.6G077900 1.0kb downstream 1.0kb downstream 4847 true scaffold_6: 6984900-6989746 Setaria italica
Seita.6G077900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6988747-6989746 Setaria italica
Seita.6G077900 2.0kb upstream 2.0kb upstream 5847 true scaffold_6: 6982900-6988746 Setaria italica
Seita.6G077900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6982900-6984899 Setaria italica
Seita.6G077900 2.0kb downstream 2.0kb downstream 5847 true scaffold_6: 6984900-6990746 Setaria italica
Seita.6G077900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6988747-6990746 Setaria italica
Seita.6G077900 5.0kb upstream 5.0kb upstream 8847 true scaffold_6: 6979900-6988746 Setaria italica
Seita.6G077900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6979900-6984899 Setaria italica
Seita.6G077900 5.0kb downstream 5.0kb downstream 8847 true scaffold_6: 6984900-6993746 Setaria italica
Seita.6G077900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6988747-6993746 Setaria italica
Seita.6G077900 10.0kb upstream 10.0kb upstream 13847 true scaffold_6: 6974900-6988746 Setaria italica
Seita.6G077900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6974900-6984899 Setaria italica
Seita.6G077900 10.0kb downstream 10.0kb downstream 13847 true scaffold_6: 6984900-6998746 Setaria italica
Seita.6G077900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6988747-6998746 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184126 5267 Panicoideae View MSA
124588818 5269 Grass View MSA
122045556 5273 Angiosperm View MSA
121344488 5274 Embryophyte View MSA
123428806 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.924        
cufflinks 5.24        
cufflinks 1.784       Low
cufflinks 1.556       Low
cufflinks 3.17        
cufflinks 5.936        
cufflinks 5.727        
cufflinks 11.052       High
cufflinks 13.8     High High
cufflinks 5.435        
cufflinks 4.273        
cufflinks 3.444        
cufflinks 3.258        
cufflinks 3.098        
cufflinks 3.12        
cufflinks 4.822        
cufflinks 3.764        
cufflinks 3.983        
cufflinks 2.021       Low
cufflinks 3.505        

0 Strain