Gene : Seita.6G173000 S. italica v2.2
Defline:  (1 of 2) PTHR13533:SF5 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 14-RELATED Genomic Order:  1730
Name:  ? Seita.6G173000 Secondary Identifier:  ? PAC:32701400
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G173000 0.5kb upstream 0.5kb upstream 4200 true scaffold_6: 29692353-29696552 Setaria italica
Seita.6G173000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 29692353-29692852 Setaria italica
Seita.6G173000 0.5kb downstream 0.5kb downstream 4200 true scaffold_6: 29692853-29697052 Setaria italica
Seita.6G173000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 29696553-29697052 Setaria italica
Seita.6G173000 1.0kb upstream 1.0kb upstream 4700 true scaffold_6: 29691853-29696552 Setaria italica
Seita.6G173000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 29691853-29692852 Setaria italica
Seita.6G173000 1.0kb downstream 1.0kb downstream 4700 true scaffold_6: 29692853-29697552 Setaria italica
Seita.6G173000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 29696553-29697552 Setaria italica
Seita.6G173000 2.0kb upstream 2.0kb upstream 5700 true scaffold_6: 29690853-29696552 Setaria italica
Seita.6G173000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 29690853-29692852 Setaria italica
Seita.6G173000 2.0kb downstream 2.0kb downstream 5700 true scaffold_6: 29692853-29698552 Setaria italica
Seita.6G173000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 29696553-29698552 Setaria italica
Seita.6G173000 5.0kb upstream 5.0kb upstream 8700 true scaffold_6: 29687853-29696552 Setaria italica
Seita.6G173000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 29687853-29692852 Setaria italica
Seita.6G173000 5.0kb downstream 5.0kb downstream 8700 true scaffold_6: 29692853-29701552 Setaria italica
Seita.6G173000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 29696553-29701552 Setaria italica
Seita.6G173000 10.0kb upstream 10.0kb upstream 13700 true scaffold_6: 29682853-29696552 Setaria italica
Seita.6G173000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 29682853-29692852 Setaria italica
Seita.6G173000 10.0kb downstream 10.0kb downstream 13700 true scaffold_6: 29692853-29706552 Setaria italica
Seita.6G173000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 29696553-29706552 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183012 5267 Panicoideae View MSA
124589893 5269 Grass View MSA
122045954 5273 Angiosperm View MSA
123428901 5275 Viridiplantae View MSA
121351071 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.024       High
cufflinks 3.897        
cufflinks 1.398       Low
cufflinks 1.534       Low
cufflinks 1.664       Low
cufflinks 3.616        
cufflinks 2.857        
cufflinks 2.217        
cufflinks 2.402        
cufflinks 2.793        
cufflinks 3.027        
cufflinks 4.365       High
cufflinks 3.27        
cufflinks 1.55       Low
cufflinks 3.84        
cufflinks 3.228        
cufflinks 3.813        
cufflinks 2.649        
cufflinks 1.791       Low
cufflinks 3.757        

0 Strain