Gene : Seita.6G177000 S. italica v2.2
Defline:  (1 of 2) PTHR11999:SF113 - GLUTAMATE DECARBOXYLASE 2 Genomic Order:  1770
Name:  ? Seita.6G177000 Secondary Identifier:  ? PAC:32701272
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1305 Setaria italica pathologic  
Sitalica PWY-4321 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G177000 0.5kb upstream 0.5kb upstream 5251 true scaffold_6: 30089559-30094809 Setaria italica
Seita.6G177000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 30094310-30094809 Setaria italica
Seita.6G177000 0.5kb downstream 0.5kb downstream 5251 true scaffold_6: 30089059-30094309 Setaria italica
Seita.6G177000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 30089059-30089558 Setaria italica
Seita.6G177000 1.0kb upstream 1.0kb upstream 5751 true scaffold_6: 30089559-30095309 Setaria italica
Seita.6G177000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 30094310-30095309 Setaria italica
Seita.6G177000 1.0kb downstream 1.0kb downstream 5751 true scaffold_6: 30088559-30094309 Setaria italica
Seita.6G177000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 30088559-30089558 Setaria italica
Seita.6G177000 2.0kb upstream 2.0kb upstream 6751 true scaffold_6: 30089559-30096309 Setaria italica
Seita.6G177000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 30094310-30096309 Setaria italica
Seita.6G177000 2.0kb downstream 2.0kb downstream 6751 true scaffold_6: 30087559-30094309 Setaria italica
Seita.6G177000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 30087559-30089558 Setaria italica
Seita.6G177000 5.0kb upstream 5.0kb upstream 9751 true scaffold_6: 30089559-30099309 Setaria italica
Seita.6G177000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 30094310-30099309 Setaria italica
Seita.6G177000 5.0kb downstream 5.0kb downstream 9751 true scaffold_6: 30084559-30094309 Setaria italica
Seita.6G177000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 30084559-30089558 Setaria italica
Seita.6G177000 10.0kb upstream 10.0kb upstream 14751 true scaffold_6: 30089559-30104309 Setaria italica
Seita.6G177000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 30094310-30104309 Setaria italica
Seita.6G177000 10.0kb downstream 10.0kb downstream 14751 true scaffold_6: 30079559-30094309 Setaria italica
Seita.6G177000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 30079559-30089558 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180241 5267 Panicoideae View MSA
124581396 5269 Grass View MSA
122050334 5273 Angiosperm View MSA
121350824 5274 Embryophyte View MSA
123427084 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.409     High  
cufflinks 34.45     High  
cufflinks 29.479     High  
cufflinks 40.73     High High
cufflinks 30.673     High  
cufflinks 25.537     High  
cufflinks 30.638     High  
cufflinks 19.582     High  
cufflinks 17.47     High  
cufflinks 17.188     High  
cufflinks 21.543     High  
cufflinks 10.558       Low
cufflinks 48.523     High High
cufflinks 19.153     High  
cufflinks 10.572       Low
cufflinks 29.782     High  
cufflinks 10.194       Low
cufflinks 21.322     High  
cufflinks 33.581     High  
cufflinks 8.007       Low

0 Strain