Gene : Seita.6G178000 S. italica v2.2
Defline:  (1 of 1) PTHR16950 - ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 Genomic Order:  1780
Name:  ? Seita.6G178000 Secondary Identifier:  ? PAC:32700717
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G178000 0.5kb upstream 0.5kb upstream 9069 true scaffold_6: 30177456-30186524 Setaria italica
Seita.6G178000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 30186025-30186524 Setaria italica
Seita.6G178000 0.5kb downstream 0.5kb downstream 9069 true scaffold_6: 30176956-30186024 Setaria italica
Seita.6G178000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 30176956-30177455 Setaria italica
Seita.6G178000 1.0kb upstream 1.0kb upstream 9569 true scaffold_6: 30177456-30187024 Setaria italica
Seita.6G178000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 30186025-30187024 Setaria italica
Seita.6G178000 1.0kb downstream 1.0kb downstream 9569 true scaffold_6: 30176456-30186024 Setaria italica
Seita.6G178000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 30176456-30177455 Setaria italica
Seita.6G178000 2.0kb upstream 2.0kb upstream 10569 true scaffold_6: 30177456-30188024 Setaria italica
Seita.6G178000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 30186025-30188024 Setaria italica
Seita.6G178000 2.0kb downstream 2.0kb downstream 10569 true scaffold_6: 30175456-30186024 Setaria italica
Seita.6G178000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 30175456-30177455 Setaria italica
Seita.6G178000 5.0kb upstream 5.0kb upstream 13569 true scaffold_6: 30177456-30191024 Setaria italica
Seita.6G178000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 30186025-30191024 Setaria italica
Seita.6G178000 5.0kb downstream 5.0kb downstream 13569 true scaffold_6: 30172456-30186024 Setaria italica
Seita.6G178000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 30172456-30177455 Setaria italica
Seita.6G178000 10.0kb upstream 10.0kb upstream 18569 true scaffold_6: 30177456-30196024 Setaria italica
Seita.6G178000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 30186025-30196024 Setaria italica
Seita.6G178000 10.0kb downstream 10.0kb downstream 18569 true scaffold_6: 30167456-30186024 Setaria italica
Seita.6G178000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 30167456-30177455 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179249 5267 Panicoideae View MSA
124572839 5269 Grass View MSA
122045099 5273 Angiosperm View MSA
121310398 5274 Embryophyte View MSA
123425438 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.603        
cufflinks 6.141       High
cufflinks 3.482        
cufflinks 3.084       Low
cufflinks 2.834       Low
cufflinks 5.715        
cufflinks 4.572        
cufflinks 4.304        
cufflinks 3.091       Low
cufflinks 7.203       High
cufflinks 4.812        
cufflinks 4.262        
cufflinks 4.208        
cufflinks 3.336       Low
cufflinks 6.995       High
cufflinks 4.534        
cufflinks 5.88        
cufflinks 4.177        
cufflinks 3.621        
cufflinks 5.727        

0 Strain