Gene : Seita.6G184900 S. italica v2.2
Defline:  (1 of 2) PTHR12700:SF12 - ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL Genomic Order:  1849
Name:  ? Seita.6G184900 Secondary Identifier:  ? PAC:32701427
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G184900 0.5kb upstream 0.5kb upstream 3339 true scaffold_6: 30888643-30891981 Setaria italica
Seita.6G184900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 30891482-30891981 Setaria italica
Seita.6G184900 0.5kb downstream 0.5kb downstream 3339 true scaffold_6: 30888143-30891481 Setaria italica
Seita.6G184900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 30888143-30888642 Setaria italica
Seita.6G184900 1.0kb upstream 1.0kb upstream 3839 true scaffold_6: 30888643-30892481 Setaria italica
Seita.6G184900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 30891482-30892481 Setaria italica
Seita.6G184900 1.0kb downstream 1.0kb downstream 3839 true scaffold_6: 30887643-30891481 Setaria italica
Seita.6G184900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 30887643-30888642 Setaria italica
Seita.6G184900 2.0kb upstream 2.0kb upstream 4839 true scaffold_6: 30888643-30893481 Setaria italica
Seita.6G184900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 30891482-30893481 Setaria italica
Seita.6G184900 2.0kb downstream 2.0kb downstream 4839 true scaffold_6: 30886643-30891481 Setaria italica
Seita.6G184900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 30886643-30888642 Setaria italica
Seita.6G184900 5.0kb upstream 5.0kb upstream 7839 true scaffold_6: 30888643-30896481 Setaria italica
Seita.6G184900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 30891482-30896481 Setaria italica
Seita.6G184900 5.0kb downstream 5.0kb downstream 7839 true scaffold_6: 30883643-30891481 Setaria italica
Seita.6G184900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 30883643-30888642 Setaria italica
Seita.6G184900 10.0kb upstream 10.0kb upstream 12839 true scaffold_6: 30888643-30901481 Setaria italica
Seita.6G184900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 30891482-30901481 Setaria italica
Seita.6G184900 10.0kb downstream 10.0kb downstream 12839 true scaffold_6: 30878643-30891481 Setaria italica
Seita.6G184900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 30878643-30888642 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179099 5267 Panicoideae View MSA
124585577 5269 Grass View MSA
122044674 5273 Angiosperm View MSA
121348780 5274 Embryophyte View MSA
123427707 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 53.072     High  
cufflinks 70.513     High  
cufflinks 34.699     High Low
cufflinks 40.904     High  
cufflinks 45.027     High  
cufflinks 66.879     High  
cufflinks 49.033     High  
cufflinks 117.114     High High
cufflinks 68.834     High  
cufflinks 104.905     High High
cufflinks 70.776     High  
cufflinks 93.583     High  
cufflinks 90.401     High  
cufflinks 45.756     High  
cufflinks 91.611     High  
cufflinks 24.369     High Low
cufflinks 128.808     High High
cufflinks 18.426     High Low
cufflinks 44.828     High  
cufflinks 120.569     High High

0 Strain