Gene : Seita.6G203900 S. italica v2.2
Defline:  (1 of 4) 2.7.1.3 - Ketohexokinase / Hepatic fructokinase Genomic Order:  2039
Name:  ? Seita.6G203900 Secondary Identifier:  ? PAC:32699230
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY66-373 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G203900 0.5kb upstream 0.5kb upstream 4596 true scaffold_6: 32389823-32394418 Setaria italica
Seita.6G203900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 32389823-32390322 Setaria italica
Seita.6G203900 0.5kb downstream 0.5kb downstream 4596 true scaffold_6: 32390323-32394918 Setaria italica
Seita.6G203900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 32394419-32394918 Setaria italica
Seita.6G203900 1.0kb upstream 1.0kb upstream 5096 true scaffold_6: 32389323-32394418 Setaria italica
Seita.6G203900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 32389323-32390322 Setaria italica
Seita.6G203900 1.0kb downstream 1.0kb downstream 5096 true scaffold_6: 32390323-32395418 Setaria italica
Seita.6G203900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 32394419-32395418 Setaria italica
Seita.6G203900 2.0kb upstream 2.0kb upstream 6096 true scaffold_6: 32388323-32394418 Setaria italica
Seita.6G203900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 32388323-32390322 Setaria italica
Seita.6G203900 2.0kb downstream 2.0kb downstream 6096 true scaffold_6: 32390323-32396418 Setaria italica
Seita.6G203900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 32394419-32396418 Setaria italica
Seita.6G203900 5.0kb upstream 5.0kb upstream 9096 true scaffold_6: 32385323-32394418 Setaria italica
Seita.6G203900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 32385323-32390322 Setaria italica
Seita.6G203900 5.0kb downstream 5.0kb downstream 9096 true scaffold_6: 32390323-32399418 Setaria italica
Seita.6G203900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 32394419-32399418 Setaria italica
Seita.6G203900 10.0kb upstream 10.0kb upstream 14096 true scaffold_6: 32380323-32394418 Setaria italica
Seita.6G203900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 32380323-32390322 Setaria italica
Seita.6G203900 10.0kb downstream 10.0kb downstream 14096 true scaffold_6: 32390323-32404418 Setaria italica
Seita.6G203900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 32394419-32404418 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190109 5267 Panicoideae View MSA
124570454 5269 Grass View MSA
122044169 5273 Angiosperm View MSA
121347285 5274 Embryophyte View MSA
123428634 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.94        
cufflinks 7.018        
cufflinks 5.54        
cufflinks 5.969        
cufflinks 16.407     High High
cufflinks 6.666        
cufflinks 10.845        
cufflinks 15.73     High High
cufflinks 17.168     High High
cufflinks 7.952        
cufflinks 7.513        
cufflinks 4.492       Low
cufflinks 7.529        
cufflinks 4.335       Low
cufflinks 7.848        
cufflinks 12.873     High High
cufflinks 5.409        
cufflinks 5.376        
cufflinks 3.371       Low
cufflinks 6.991        

0 Strain