Gene : Seita.6G208400 S. italica v2.2
Defline:  (1 of 1) PTHR11668:SF241 - SERINE/THREONINE-PROTEIN PHOSPHATASE 7 INACTIVE HOMOLOG-RELATED Genomic Order:  2084
Name:  ? Seita.6G208400 Secondary Identifier:  ? PAC:32701457
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G208400 0.5kb upstream 0.5kb upstream 4812 true scaffold_6: 32726692-32731503 Setaria italica
Seita.6G208400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 32726692-32727191 Setaria italica
Seita.6G208400 0.5kb downstream 0.5kb downstream 4812 true scaffold_6: 32727192-32732003 Setaria italica
Seita.6G208400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 32731504-32732003 Setaria italica
Seita.6G208400 1.0kb upstream 1.0kb upstream 5312 true scaffold_6: 32726192-32731503 Setaria italica
Seita.6G208400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 32726192-32727191 Setaria italica
Seita.6G208400 1.0kb downstream 1.0kb downstream 5312 true scaffold_6: 32727192-32732503 Setaria italica
Seita.6G208400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 32731504-32732503 Setaria italica
Seita.6G208400 2.0kb upstream 2.0kb upstream 6312 true scaffold_6: 32725192-32731503 Setaria italica
Seita.6G208400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 32725192-32727191 Setaria italica
Seita.6G208400 2.0kb downstream 2.0kb downstream 6312 true scaffold_6: 32727192-32733503 Setaria italica
Seita.6G208400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 32731504-32733503 Setaria italica
Seita.6G208400 5.0kb upstream 5.0kb upstream 9312 true scaffold_6: 32722192-32731503 Setaria italica
Seita.6G208400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 32722192-32727191 Setaria italica
Seita.6G208400 5.0kb downstream 5.0kb downstream 9312 true scaffold_6: 32727192-32736503 Setaria italica
Seita.6G208400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 32731504-32736503 Setaria italica
Seita.6G208400 10.0kb upstream 10.0kb upstream 14312 true scaffold_6: 32717192-32731503 Setaria italica
Seita.6G208400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 32717192-32727191 Setaria italica
Seita.6G208400 10.0kb downstream 10.0kb downstream 14312 true scaffold_6: 32727192-32741503 Setaria italica
Seita.6G208400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 32731504-32741503 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181380 5267 Panicoideae View MSA
124576153 5269 Grass View MSA
122047426 5273 Angiosperm View MSA
123429115 5275 Viridiplantae View MSA
121344801 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.793        
cufflinks 4.268       Low
cufflinks 5.102       Low
cufflinks 6.26        
cufflinks 6.33        
cufflinks 4.685       Low
cufflinks 7.129        
cufflinks 8.086        
cufflinks 6.876        
cufflinks 5.952        
cufflinks 5.005       Low
cufflinks 12.427       High
cufflinks 7.584        
cufflinks 5.856        
cufflinks 7.548        
cufflinks 8.34        
cufflinks 10.871       High
cufflinks 11.693     High High
cufflinks 9.436        
cufflinks 8.174        

0 Strain