Gene : Seita.6G209600 S. italica v2.2
Defline:  (1 of 3) PTHR10366:SF307 - TETRAKETIDE ALPHA-PYRONE REDUCTASE 1 Genomic Order:  2096
Name:  ? Seita.6G209600 Secondary Identifier:  ? PAC:32699973
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G209600 0.5kb upstream 0.5kb upstream 3017 true scaffold_6: 32822851-32825867 Setaria italica
Seita.6G209600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 32825368-32825867 Setaria italica
Seita.6G209600 0.5kb downstream 0.5kb downstream 3017 true scaffold_6: 32822351-32825367 Setaria italica
Seita.6G209600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 32822351-32822850 Setaria italica
Seita.6G209600 1.0kb upstream 1.0kb upstream 3517 true scaffold_6: 32822851-32826367 Setaria italica
Seita.6G209600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 32825368-32826367 Setaria italica
Seita.6G209600 1.0kb downstream 1.0kb downstream 3517 true scaffold_6: 32821851-32825367 Setaria italica
Seita.6G209600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 32821851-32822850 Setaria italica
Seita.6G209600 2.0kb upstream 2.0kb upstream 4517 true scaffold_6: 32822851-32827367 Setaria italica
Seita.6G209600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 32825368-32827367 Setaria italica
Seita.6G209600 2.0kb downstream 2.0kb downstream 4517 true scaffold_6: 32820851-32825367 Setaria italica
Seita.6G209600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 32820851-32822850 Setaria italica
Seita.6G209600 5.0kb upstream 5.0kb upstream 7517 true scaffold_6: 32822851-32830367 Setaria italica
Seita.6G209600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 32825368-32830367 Setaria italica
Seita.6G209600 5.0kb downstream 5.0kb downstream 7517 true scaffold_6: 32817851-32825367 Setaria italica
Seita.6G209600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 32817851-32822850 Setaria italica
Seita.6G209600 10.0kb upstream 10.0kb upstream 12517 true scaffold_6: 32822851-32835367 Setaria italica
Seita.6G209600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 32825368-32835367 Setaria italica
Seita.6G209600 10.0kb downstream 10.0kb downstream 12517 true scaffold_6: 32812851-32825367 Setaria italica
Seita.6G209600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 32812851-32822850 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179500 5267 Panicoideae View MSA
124585951 5269 Grass View MSA
122047084 5273 Angiosperm View MSA
121347688 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.154        
cufflinks 37.849     High High
cufflinks 0.105        
cufflinks 0.071     Low  
cufflinks 0.095        
cufflinks 12.921       High
cufflinks 0.091     Low  
cufflinks 0.167        
cufflinks 0.222        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.05     Low  
cufflinks 0.136        
cufflinks 0.435        
cufflinks 0.139        
cufflinks 0.075     Low  
cufflinks 0.087     Low  
cufflinks 0.127     Low  
cufflinks 0.066     Low  
cufflinks 0.125        
cufflinks 0.163        

0 Strain