Gene : Seita.6G123400 S. italica v2.2
Defline:  (1 of 1) PF04030//PF04783 - D-arabinono-1,4-lactone oxidase (ALO) // Protein of unknown function (DUF630) (DUF630) Genomic Order:  1234
Name:  ? Seita.6G123400 Secondary Identifier:  ? PAC:32700114
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G123400 0.5kb upstream 0.5kb upstream 2170 true scaffold_6: 21106518-21108687 Setaria italica
Seita.6G123400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 21106518-21107017 Setaria italica
Seita.6G123400 0.5kb downstream 0.5kb downstream 2170 true scaffold_6: 21107018-21109187 Setaria italica
Seita.6G123400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 21108688-21109187 Setaria italica
Seita.6G123400 1.0kb upstream 1.0kb upstream 2670 true scaffold_6: 21106018-21108687 Setaria italica
Seita.6G123400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 21106018-21107017 Setaria italica
Seita.6G123400 1.0kb downstream 1.0kb downstream 2670 true scaffold_6: 21107018-21109687 Setaria italica
Seita.6G123400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 21108688-21109687 Setaria italica
Seita.6G123400 2.0kb upstream 2.0kb upstream 3670 true scaffold_6: 21105018-21108687 Setaria italica
Seita.6G123400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 21105018-21107017 Setaria italica
Seita.6G123400 2.0kb downstream 2.0kb downstream 3670 true scaffold_6: 21107018-21110687 Setaria italica
Seita.6G123400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 21108688-21110687 Setaria italica
Seita.6G123400 5.0kb upstream 5.0kb upstream 6670 true scaffold_6: 21102018-21108687 Setaria italica
Seita.6G123400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 21102018-21107017 Setaria italica
Seita.6G123400 5.0kb downstream 5.0kb downstream 6670 true scaffold_6: 21107018-21113687 Setaria italica
Seita.6G123400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 21108688-21113687 Setaria italica
Seita.6G123400 10.0kb upstream 10.0kb upstream 11670 true scaffold_6: 21097018-21108687 Setaria italica
Seita.6G123400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 21097018-21107017 Setaria italica
Seita.6G123400 10.0kb downstream 10.0kb downstream 11670 true scaffold_6: 21107018-21118687 Setaria italica
Seita.6G123400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 21108688-21118687 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029710 5273 Angiosperm View MSA
122118284 5267 Panicoideae View MSA
124591886 5269 Grass View MSA
121299007 5274 Embryophyte View MSA
123336936 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low  
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain