Gene : Seita.6G124900 S. italica v2.2
Defline:  (1 of 1) PTHR31846:SF10 - CHLOROPLASTIC GROUP IIA INTRON SPLICING FACILITATOR CRS1, CHLOROPLASTIC Genomic Order:  1249
Name:  ? Seita.6G124900 Secondary Identifier:  ? PAC:32700603
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G124900 0.5kb upstream 0.5kb upstream 5067 true scaffold_6: 21415321-21420387 Setaria italica
Seita.6G124900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 21419888-21420387 Setaria italica
Seita.6G124900 0.5kb downstream 0.5kb downstream 5067 true scaffold_6: 21414821-21419887 Setaria italica
Seita.6G124900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 21414821-21415320 Setaria italica
Seita.6G124900 1.0kb upstream 1.0kb upstream 5567 true scaffold_6: 21415321-21420887 Setaria italica
Seita.6G124900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 21419888-21420887 Setaria italica
Seita.6G124900 1.0kb downstream 1.0kb downstream 5567 true scaffold_6: 21414321-21419887 Setaria italica
Seita.6G124900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 21414321-21415320 Setaria italica
Seita.6G124900 2.0kb upstream 2.0kb upstream 6567 true scaffold_6: 21415321-21421887 Setaria italica
Seita.6G124900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 21419888-21421887 Setaria italica
Seita.6G124900 2.0kb downstream 2.0kb downstream 6567 true scaffold_6: 21413321-21419887 Setaria italica
Seita.6G124900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 21413321-21415320 Setaria italica
Seita.6G124900 5.0kb upstream 5.0kb upstream 9567 true scaffold_6: 21415321-21424887 Setaria italica
Seita.6G124900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 21419888-21424887 Setaria italica
Seita.6G124900 5.0kb downstream 5.0kb downstream 9567 true scaffold_6: 21410321-21419887 Setaria italica
Seita.6G124900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 21410321-21415320 Setaria italica
Seita.6G124900 10.0kb upstream 10.0kb upstream 14567 true scaffold_6: 21415321-21429887 Setaria italica
Seita.6G124900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 21419888-21429887 Setaria italica
Seita.6G124900 10.0kb downstream 10.0kb downstream 14567 true scaffold_6: 21405321-21419887 Setaria italica
Seita.6G124900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 21405321-21415320 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184128 5267 Panicoideae View MSA
124569221 5269 Grass View MSA
122046600 5273 Angiosperm View MSA
121310632 5274 Embryophyte View MSA
123348066 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.844        
cufflinks 5.39        
cufflinks 10.143       High
cufflinks 10.658       High
cufflinks 9.712        
cufflinks 4.791        
cufflinks 7.585        
cufflinks 8.578        
cufflinks 9.432        
cufflinks 1.901       Low
cufflinks 3.618        
cufflinks 1.166       Low
cufflinks 2.103       Low
cufflinks 5.241        
cufflinks 1.742       Low
cufflinks 11.388       High
cufflinks 1.584       Low
cufflinks 5.293        
cufflinks 9.47        
cufflinks 1.64       Low

0 Strain