Gene : Seita.6G140900 S. italica v2.2
Defline:  (1 of 3) 3.5.2.3 - Dihydroorotase / DHOase Genomic Order:  1409
Name:  ? Seita.6G140900 Secondary Identifier:  ? PAC:32701176
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-162 Setaria italica pathologic  
Sitalica PWY-5686 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G140900 0.5kb upstream 0.5kb upstream 4074 true scaffold_6: 25183683-25187756 Setaria italica
Seita.6G140900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 25183683-25184182 Setaria italica
Seita.6G140900 0.5kb downstream 0.5kb downstream 4074 true scaffold_6: 25184183-25188256 Setaria italica
Seita.6G140900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 25187757-25188256 Setaria italica
Seita.6G140900 1.0kb upstream 1.0kb upstream 4574 true scaffold_6: 25183183-25187756 Setaria italica
Seita.6G140900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 25183183-25184182 Setaria italica
Seita.6G140900 1.0kb downstream 1.0kb downstream 4574 true scaffold_6: 25184183-25188756 Setaria italica
Seita.6G140900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 25187757-25188756 Setaria italica
Seita.6G140900 2.0kb upstream 2.0kb upstream 5574 true scaffold_6: 25182183-25187756 Setaria italica
Seita.6G140900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 25182183-25184182 Setaria italica
Seita.6G140900 2.0kb downstream 2.0kb downstream 5574 true scaffold_6: 25184183-25189756 Setaria italica
Seita.6G140900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 25187757-25189756 Setaria italica
Seita.6G140900 5.0kb upstream 5.0kb upstream 8574 true scaffold_6: 25179183-25187756 Setaria italica
Seita.6G140900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 25179183-25184182 Setaria italica
Seita.6G140900 5.0kb downstream 5.0kb downstream 8574 true scaffold_6: 25184183-25192756 Setaria italica
Seita.6G140900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 25187757-25192756 Setaria italica
Seita.6G140900 10.0kb upstream 10.0kb upstream 13574 true scaffold_6: 25174183-25187756 Setaria italica
Seita.6G140900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 25174183-25184182 Setaria italica
Seita.6G140900 10.0kb downstream 10.0kb downstream 13574 true scaffold_6: 25184183-25197756 Setaria italica
Seita.6G140900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 25187757-25197756 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041185 5273 Angiosperm View MSA
122192590 5267 Panicoideae View MSA
124590049 5269 Grass View MSA
121347415 5274 Embryophyte View MSA
123424223 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.699        
cufflinks 12.489       High
cufflinks 2.757       Low
cufflinks 2.454       Low
cufflinks 3.079       Low
cufflinks 10.203       High
cufflinks 5.391        
cufflinks 8.083        
cufflinks 5.597        
cufflinks 9.664       High
cufflinks 6.53        
cufflinks 5.07        
cufflinks 4.232        
cufflinks 4.305        
cufflinks 5.436        
cufflinks 4.476        
cufflinks 5.92        
cufflinks 2.944       Low
cufflinks 2.339       Low
cufflinks 6.002        

0 Strain