Gene : Seita.6G158500 S. italica v2.2
Defline:  (1 of 1) PTHR21649//PTHR21649:SF4 - CHLOROPHYLL A/B BINDING PROTEIN Genomic Order:  1585
Name:  ? Seita.6G158500 Secondary Identifier:  ? PAC:32699437
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G158500 0.5kb upstream 0.5kb upstream 1826 true scaffold_6: 28094565-28096390 Setaria italica
Seita.6G158500 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 28094565-28095064 Setaria italica
Seita.6G158500 0.5kb downstream 0.5kb downstream 1826 true scaffold_6: 28095065-28096890 Setaria italica
Seita.6G158500 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 28096391-28096890 Setaria italica
Seita.6G158500 1.0kb upstream 1.0kb upstream 2326 true scaffold_6: 28094065-28096390 Setaria italica
Seita.6G158500 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 28094065-28095064 Setaria italica
Seita.6G158500 1.0kb downstream 1.0kb downstream 2326 true scaffold_6: 28095065-28097390 Setaria italica
Seita.6G158500 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 28096391-28097390 Setaria italica
Seita.6G158500 2.0kb upstream 2.0kb upstream 3326 true scaffold_6: 28093065-28096390 Setaria italica
Seita.6G158500 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 28093065-28095064 Setaria italica
Seita.6G158500 2.0kb downstream 2.0kb downstream 3326 true scaffold_6: 28095065-28098390 Setaria italica
Seita.6G158500 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 28096391-28098390 Setaria italica
Seita.6G158500 5.0kb upstream 5.0kb upstream 6326 true scaffold_6: 28090065-28096390 Setaria italica
Seita.6G158500 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 28090065-28095064 Setaria italica
Seita.6G158500 5.0kb downstream 5.0kb downstream 6326 true scaffold_6: 28095065-28101390 Setaria italica
Seita.6G158500 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 28096391-28101390 Setaria italica
Seita.6G158500 10.0kb upstream 10.0kb upstream 11326 true scaffold_6: 28085065-28096390 Setaria italica
Seita.6G158500 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 28085065-28095064 Setaria italica
Seita.6G158500 10.0kb downstream 10.0kb downstream 11326 true scaffold_6: 28095065-28106390 Setaria italica
Seita.6G158500 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 28096391-28106390 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199764 5267 Panicoideae View MSA
124588622 5269 Grass View MSA
122041547 5273 Angiosperm View MSA
121346524 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.421     High  
cufflinks 256.631     High  
cufflinks 580.08     High  
cufflinks 819.673     High  
cufflinks 1673.702     High High
cufflinks 188.091     High  
cufflinks 1324.712     High  
cufflinks 1623.915     High High
cufflinks 1078.086     High  
cufflinks 22.254     High  
cufflinks 21.031     High  
cufflinks 0.111     Low Low
cufflinks 4.968        
cufflinks 257.905     High  
cufflinks 1.241       Low
cufflinks 730.409     High  
cufflinks 0.285       Low
cufflinks 24.138     High  
cufflinks 380.949     High  
cufflinks 0.105     Low Low

0 Strain