Gene : Seita.6G254800 S. italica v2.2
Defline:  (1 of 4) 2.7.1.3 - Ketohexokinase / Hepatic fructokinase Genomic Order:  2548
Name:  ? Seita.6G254800 Secondary Identifier:  ? PAC:32699776
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY66-373 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G254800 0.5kb upstream 0.5kb upstream 3154 true scaffold_6: 35938755-35941908 Setaria italica
Seita.6G254800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35938755-35939254 Setaria italica
Seita.6G254800 0.5kb downstream 0.5kb downstream 3154 true scaffold_6: 35939255-35942408 Setaria italica
Seita.6G254800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35941909-35942408 Setaria italica
Seita.6G254800 1.0kb upstream 1.0kb upstream 3654 true scaffold_6: 35938255-35941908 Setaria italica
Seita.6G254800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35938255-35939254 Setaria italica
Seita.6G254800 1.0kb downstream 1.0kb downstream 3654 true scaffold_6: 35939255-35942908 Setaria italica
Seita.6G254800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35941909-35942908 Setaria italica
Seita.6G254800 2.0kb upstream 2.0kb upstream 4654 true scaffold_6: 35937255-35941908 Setaria italica
Seita.6G254800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35937255-35939254 Setaria italica
Seita.6G254800 2.0kb downstream 2.0kb downstream 4654 true scaffold_6: 35939255-35943908 Setaria italica
Seita.6G254800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35941909-35943908 Setaria italica
Seita.6G254800 5.0kb upstream 5.0kb upstream 7654 true scaffold_6: 35934255-35941908 Setaria italica
Seita.6G254800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35934255-35939254 Setaria italica
Seita.6G254800 5.0kb downstream 5.0kb downstream 7654 true scaffold_6: 35939255-35946908 Setaria italica
Seita.6G254800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35941909-35946908 Setaria italica
Seita.6G254800 10.0kb upstream 10.0kb upstream 12654 true scaffold_6: 35929255-35941908 Setaria italica
Seita.6G254800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35929255-35939254 Setaria italica
Seita.6G254800 10.0kb downstream 10.0kb downstream 12654 true scaffold_6: 35939255-35951908 Setaria italica
Seita.6G254800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35941909-35951908 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190109 5267 Panicoideae View MSA
124570454 5269 Grass View MSA
122044169 5273 Angiosperm View MSA
121347285 5274 Embryophyte View MSA
123428634 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.268        
cufflinks 4.82       High
cufflinks 1.786        
cufflinks 1.628       Low
cufflinks 1.356       Low
cufflinks 4.132       High
cufflinks 2.874        
cufflinks 2.681        
cufflinks 1.346       Low
cufflinks 3.247        
cufflinks 1.99        
cufflinks 2.011        
cufflinks 2.062        
cufflinks 2.863        
cufflinks 2.593        
cufflinks 2.965        
cufflinks 2.913        
cufflinks 2.975        
cufflinks 1.133       Low
cufflinks 2.917        

0 Strain