Gene : Seita.7G013900 S. italica v2.2
Defline:  (1 of 1) 1.3.1.89 - tRNA-dihydrouridine(47) synthase (NAD(P)(+)) / tRNA-dihydrouridine synthase 3 Genomic Order:  139
Name:  ? Seita.7G013900 Secondary Identifier:  ? PAC:32703153
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G013900 0.5kb upstream 0.5kb upstream 7211 true scaffold_7: 2581817-2589027 Setaria italica
Seita.7G013900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 2581817-2582316 Setaria italica
Seita.7G013900 0.5kb downstream 0.5kb downstream 7211 true scaffold_7: 2582317-2589527 Setaria italica
Seita.7G013900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 2589028-2589527 Setaria italica
Seita.7G013900 1.0kb upstream 1.0kb upstream 7711 true scaffold_7: 2581317-2589027 Setaria italica
Seita.7G013900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 2581317-2582316 Setaria italica
Seita.7G013900 1.0kb downstream 1.0kb downstream 7711 true scaffold_7: 2582317-2590027 Setaria italica
Seita.7G013900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 2589028-2590027 Setaria italica
Seita.7G013900 2.0kb upstream 2.0kb upstream 8711 true scaffold_7: 2580317-2589027 Setaria italica
Seita.7G013900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 2580317-2582316 Setaria italica
Seita.7G013900 2.0kb downstream 2.0kb downstream 8711 true scaffold_7: 2582317-2591027 Setaria italica
Seita.7G013900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 2589028-2591027 Setaria italica
Seita.7G013900 5.0kb upstream 5.0kb upstream 11711 true scaffold_7: 2577317-2589027 Setaria italica
Seita.7G013900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 2577317-2582316 Setaria italica
Seita.7G013900 5.0kb downstream 5.0kb downstream 11711 true scaffold_7: 2582317-2594027 Setaria italica
Seita.7G013900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 2589028-2594027 Setaria italica
Seita.7G013900 10.0kb upstream 10.0kb upstream 16711 true scaffold_7: 2572317-2589027 Setaria italica
Seita.7G013900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 2572317-2582316 Setaria italica
Seita.7G013900 10.0kb downstream 10.0kb downstream 16711 true scaffold_7: 2582317-2599027 Setaria italica
Seita.7G013900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 2589028-2599027 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186343 5267 Panicoideae View MSA
124570026 5269 Grass View MSA
122047874 5273 Angiosperm View MSA
121343819 5274 Embryophyte View MSA
123428585 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.135        
cufflinks 10.466       High
cufflinks 7.098        
cufflinks 5.296       Low
cufflinks 6.127        
cufflinks 10.312       High
cufflinks 6.487        
cufflinks 7.948        
cufflinks 10.597       High
cufflinks 5.847        
cufflinks 7.448        
cufflinks 8.757        
cufflinks 6.228        
cufflinks 8.621        
cufflinks 9.685       High
cufflinks 4.36       Low
cufflinks 10.407       High
cufflinks 5.667        
cufflinks 4.494       Low
cufflinks 9.194        

0 Strain