Gene : Seita.7G020900 S. italica v2.2
Defline:  (1 of 1) 4.4.1.9 - L-3-cyanoalanine synthase / Beta-cyanoalanine synthase Genomic Order:  209
Name:  ? Seita.7G020900 Secondary Identifier:  ? PAC:32704346
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ASPSYNII-PWY Setaria italica pathologic  
Sitalica CYSTSYN-PWY Setaria italica pathologic  
Sitalica P401-PWY Setaria italica pathologic  
Sitalica PWY-6936 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G020900 0.5kb upstream 0.5kb upstream 5135 true scaffold_7: 3909480-3914614 Setaria italica
Seita.7G020900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 3914115-3914614 Setaria italica
Seita.7G020900 0.5kb downstream 0.5kb downstream 5135 true scaffold_7: 3908980-3914114 Setaria italica
Seita.7G020900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 3908980-3909479 Setaria italica
Seita.7G020900 1.0kb upstream 1.0kb upstream 5635 true scaffold_7: 3909480-3915114 Setaria italica
Seita.7G020900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 3914115-3915114 Setaria italica
Seita.7G020900 1.0kb downstream 1.0kb downstream 5635 true scaffold_7: 3908480-3914114 Setaria italica
Seita.7G020900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 3908480-3909479 Setaria italica
Seita.7G020900 2.0kb upstream 2.0kb upstream 6635 true scaffold_7: 3909480-3916114 Setaria italica
Seita.7G020900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 3914115-3916114 Setaria italica
Seita.7G020900 2.0kb downstream 2.0kb downstream 6635 true scaffold_7: 3907480-3914114 Setaria italica
Seita.7G020900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 3907480-3909479 Setaria italica
Seita.7G020900 5.0kb upstream 5.0kb upstream 9635 true scaffold_7: 3909480-3919114 Setaria italica
Seita.7G020900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 3914115-3919114 Setaria italica
Seita.7G020900 5.0kb downstream 5.0kb downstream 9635 true scaffold_7: 3904480-3914114 Setaria italica
Seita.7G020900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 3904480-3909479 Setaria italica
Seita.7G020900 10.0kb upstream 10.0kb upstream 14635 true scaffold_7: 3909480-3924114 Setaria italica
Seita.7G020900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 3914115-3924114 Setaria italica
Seita.7G020900 10.0kb downstream 10.0kb downstream 14635 true scaffold_7: 3899480-3914114 Setaria italica
Seita.7G020900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 3899480-3909479 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040912 5273 Angiosperm View MSA
122179784 5267 Panicoideae View MSA
124580174 5269 Grass View MSA
121309765 5274 Embryophyte View MSA
123347430 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.611     High  
cufflinks 5.544       Low
cufflinks 50.167     High High
cufflinks 65.605     High High
cufflinks 53.861     High High
cufflinks 8.436       Low
cufflinks 20.661     High  
cufflinks 45.175     High High
cufflinks 20.85     High  
cufflinks 9.975        
cufflinks 12.398        
cufflinks 12.058        
cufflinks 23.302     High  
cufflinks 43.528     High High
cufflinks 10.308        
cufflinks 27.761     High  
cufflinks 20.002     High  
cufflinks 11.841     High  
cufflinks 62.646     High High
cufflinks 7.731       Low

0 Strain