Gene : Seita.6G236100 S. italica v2.2
Defline:  (1 of 2) PTHR10015//PTHR10015:SF194 - HEAT SHOCK TRANSCRIPTION FACTOR Genomic Order:  2361
Name:  ? Seita.6G236100 Secondary Identifier:  ? PAC:32700856
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G236100 0.5kb upstream 0.5kb upstream 2778 true scaffold_6: 34812743-34815520 Setaria italica
Seita.6G236100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 34815021-34815520 Setaria italica
Seita.6G236100 0.5kb downstream 0.5kb downstream 2778 true scaffold_6: 34812243-34815020 Setaria italica
Seita.6G236100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 34812243-34812742 Setaria italica
Seita.6G236100 1.0kb upstream 1.0kb upstream 3278 true scaffold_6: 34812743-34816020 Setaria italica
Seita.6G236100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 34815021-34816020 Setaria italica
Seita.6G236100 1.0kb downstream 1.0kb downstream 3278 true scaffold_6: 34811743-34815020 Setaria italica
Seita.6G236100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 34811743-34812742 Setaria italica
Seita.6G236100 2.0kb upstream 2.0kb upstream 4278 true scaffold_6: 34812743-34817020 Setaria italica
Seita.6G236100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 34815021-34817020 Setaria italica
Seita.6G236100 2.0kb downstream 2.0kb downstream 4278 true scaffold_6: 34810743-34815020 Setaria italica
Seita.6G236100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 34810743-34812742 Setaria italica
Seita.6G236100 5.0kb upstream 5.0kb upstream 7278 true scaffold_6: 34812743-34820020 Setaria italica
Seita.6G236100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 34815021-34820020 Setaria italica
Seita.6G236100 5.0kb downstream 5.0kb downstream 7278 true scaffold_6: 34807743-34815020 Setaria italica
Seita.6G236100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 34807743-34812742 Setaria italica
Seita.6G236100 10.0kb upstream 10.0kb upstream 12278 true scaffold_6: 34812743-34825020 Setaria italica
Seita.6G236100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 34815021-34825020 Setaria italica
Seita.6G236100 10.0kb downstream 10.0kb downstream 12278 true scaffold_6: 34802743-34815020 Setaria italica
Seita.6G236100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 34802743-34812742 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181349 5267 Panicoideae View MSA
124586880 5269 Grass View MSA
122047819 5273 Angiosperm View MSA
121349623 5274 Embryophyte View MSA
123428852 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.062        
cufflinks 1.102        
cufflinks 0.316       Low
cufflinks 0.209       Low
cufflinks 0.418        
cufflinks 1.391        
cufflinks 0.334       Low
cufflinks 0.543        
cufflinks 0.549        
cufflinks 3.452       High
cufflinks 0.854        
cufflinks 0.904        
cufflinks 1.083        
cufflinks 2.512       High
cufflinks 0.771        
cufflinks 0.607        
cufflinks 0.243       Low
cufflinks 1.975       High
cufflinks 0.586        
cufflinks 0.37        

0 Strain