Gene : Seita.6G243400 S. italica v2.2
Defline:  (1 of 1) PTHR31852:SF7 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Genomic Order:  2434
Name:  ? Seita.6G243400 Secondary Identifier:  ? PAC:32700002
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G243400 0.5kb upstream 0.5kb upstream 1076 true scaffold_6: 35200463-35201538 Setaria italica
Seita.6G243400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35201039-35201538 Setaria italica
Seita.6G243400 0.5kb downstream 0.5kb downstream 1076 true scaffold_6: 35199963-35201038 Setaria italica
Seita.6G243400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35199963-35200462 Setaria italica
Seita.6G243400 1.0kb upstream 1.0kb upstream 1576 true scaffold_6: 35200463-35202038 Setaria italica
Seita.6G243400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35201039-35202038 Setaria italica
Seita.6G243400 1.0kb downstream 1.0kb downstream 1576 true scaffold_6: 35199463-35201038 Setaria italica
Seita.6G243400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35199463-35200462 Setaria italica
Seita.6G243400 2.0kb upstream 2.0kb upstream 2576 true scaffold_6: 35200463-35203038 Setaria italica
Seita.6G243400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35201039-35203038 Setaria italica
Seita.6G243400 2.0kb downstream 2.0kb downstream 2576 true scaffold_6: 35198463-35201038 Setaria italica
Seita.6G243400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35198463-35200462 Setaria italica
Seita.6G243400 5.0kb upstream 5.0kb upstream 5576 true scaffold_6: 35200463-35206038 Setaria italica
Seita.6G243400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35201039-35206038 Setaria italica
Seita.6G243400 5.0kb downstream 5.0kb downstream 5576 true scaffold_6: 35195463-35201038 Setaria italica
Seita.6G243400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35195463-35200462 Setaria italica
Seita.6G243400 10.0kb upstream 10.0kb upstream 10576 true scaffold_6: 35200463-35211038 Setaria italica
Seita.6G243400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35201039-35211038 Setaria italica
Seita.6G243400 10.0kb downstream 10.0kb downstream 10576 true scaffold_6: 35190463-35201038 Setaria italica
Seita.6G243400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35190463-35200462 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189891 5267 Panicoideae View MSA
124584932 5269 Grass View MSA
122047414 5273 Angiosperm View MSA
121346777 5274 Embryophyte View MSA
123380442 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.109        
cufflinks 1.165        
cufflinks 0.299       Low
cufflinks 0.314       Low
cufflinks 0.671        
cufflinks 2.045        
cufflinks 2.302       High
cufflinks 3.026       High
cufflinks 2.902       High
cufflinks 7.952       High
cufflinks 0.698        
cufflinks 0.316       Low
cufflinks 0.574        
cufflinks 0.628        
cufflinks 0.313       Low
cufflinks 1.175        
cufflinks 0.42        
cufflinks 0.291       Low
cufflinks 0.788        
cufflinks 0.825        

0 Strain