Gene : Seita.6G243700 S. italica v2.2
Defline:  (1 of 2) PTHR23105//PTHR23105:SF44 - RIBOSOMAL PROTEIN L7AE FAMILY MEMBER Genomic Order:  2437
Name:  ? Seita.6G243700 Secondary Identifier:  ? PAC:32700163
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G243700 0.5kb upstream 0.5kb upstream 3925 true scaffold_6: 35210692-35214616 Setaria italica
Seita.6G243700 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35214117-35214616 Setaria italica
Seita.6G243700 0.5kb downstream 0.5kb downstream 3925 true scaffold_6: 35210192-35214116 Setaria italica
Seita.6G243700 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35210192-35210691 Setaria italica
Seita.6G243700 1.0kb upstream 1.0kb upstream 4425 true scaffold_6: 35210692-35215116 Setaria italica
Seita.6G243700 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35214117-35215116 Setaria italica
Seita.6G243700 1.0kb downstream 1.0kb downstream 4425 true scaffold_6: 35209692-35214116 Setaria italica
Seita.6G243700 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35209692-35210691 Setaria italica
Seita.6G243700 2.0kb upstream 2.0kb upstream 5425 true scaffold_6: 35210692-35216116 Setaria italica
Seita.6G243700 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35214117-35216116 Setaria italica
Seita.6G243700 2.0kb downstream 2.0kb downstream 5425 true scaffold_6: 35208692-35214116 Setaria italica
Seita.6G243700 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35208692-35210691 Setaria italica
Seita.6G243700 5.0kb upstream 5.0kb upstream 8425 true scaffold_6: 35210692-35219116 Setaria italica
Seita.6G243700 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35214117-35219116 Setaria italica
Seita.6G243700 5.0kb downstream 5.0kb downstream 8425 true scaffold_6: 35205692-35214116 Setaria italica
Seita.6G243700 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35205692-35210691 Setaria italica
Seita.6G243700 10.0kb upstream 10.0kb upstream 13425 true scaffold_6: 35210692-35224116 Setaria italica
Seita.6G243700 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35214117-35224116 Setaria italica
Seita.6G243700 10.0kb downstream 10.0kb downstream 13425 true scaffold_6: 35200692-35214116 Setaria italica
Seita.6G243700 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35200692-35210691 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195370 5267 Panicoideae View MSA
124590801 5269 Grass View MSA
122041557 5273 Angiosperm View MSA
121346293 5274 Embryophyte View MSA
123424403 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 158.19     High  
cufflinks 119.672     High  
cufflinks 41.342     High Low
cufflinks 25.587     High Low
cufflinks 39.385     High Low
cufflinks 120.104     High  
cufflinks 127.449     High  
cufflinks 124.971     High  
cufflinks 134.946     High  
cufflinks 183.723     High High
cufflinks 137.11     High  
cufflinks 112.509     High  
cufflinks 85.04     High  
cufflinks 71.746     High  
cufflinks 100.377     High  
cufflinks 124.645     High  
cufflinks 142.16     High  
cufflinks 126.795     High  
cufflinks 52.178     High Low
cufflinks 107.171     High  

0 Strain