Gene : Seita.6G251700 S. italica v2.2
Defline:  (1 of 69) PF01357//PF03330 - Pollen allergen (Pollen_allerg_1) // Rare lipoprotein A (RlpA)-like double-psi beta-barrel (DPBB_1) Genomic Order:  2517
Name:  ? Seita.6G251700 Secondary Identifier:  ? PAC:32700472
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G251700 0.5kb upstream 0.5kb upstream 1346 true scaffold_6: 35753025-35754370 Setaria italica
Seita.6G251700 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35753025-35753524 Setaria italica
Seita.6G251700 0.5kb downstream 0.5kb downstream 1346 true scaffold_6: 35753525-35754870 Setaria italica
Seita.6G251700 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35754371-35754870 Setaria italica
Seita.6G251700 1.0kb upstream 1.0kb upstream 1846 true scaffold_6: 35752525-35754370 Setaria italica
Seita.6G251700 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35752525-35753524 Setaria italica
Seita.6G251700 1.0kb downstream 1.0kb downstream 1846 true scaffold_6: 35753525-35755370 Setaria italica
Seita.6G251700 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35754371-35755370 Setaria italica
Seita.6G251700 2.0kb upstream 2.0kb upstream 2846 true scaffold_6: 35751525-35754370 Setaria italica
Seita.6G251700 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35751525-35753524 Setaria italica
Seita.6G251700 2.0kb downstream 2.0kb downstream 2846 true scaffold_6: 35753525-35756370 Setaria italica
Seita.6G251700 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35754371-35756370 Setaria italica
Seita.6G251700 5.0kb upstream 5.0kb upstream 5846 true scaffold_6: 35748525-35754370 Setaria italica
Seita.6G251700 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35748525-35753524 Setaria italica
Seita.6G251700 5.0kb downstream 5.0kb downstream 5846 true scaffold_6: 35753525-35759370 Setaria italica
Seita.6G251700 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35754371-35759370 Setaria italica
Seita.6G251700 10.0kb upstream 10.0kb upstream 10846 true scaffold_6: 35743525-35754370 Setaria italica
Seita.6G251700 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35743525-35753524 Setaria italica
Seita.6G251700 10.0kb downstream 10.0kb downstream 10846 true scaffold_6: 35753525-35764370 Setaria italica
Seita.6G251700 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35754371-35764370 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027787 5273 Angiosperm View MSA
122189496 5267 Panicoideae View MSA
124576310 5269 Grass View MSA
123429074 5275 Viridiplantae View MSA
121297395 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.028     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.085     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.079     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low Low
cufflinks 0.045     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.115       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.1     Low High

0 Strain