Gene : Seita.7G079400 S. italica v2.2
Defline:  (1 of 3) PTHR11638//PTHR11638:SF96 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  794
Name:  ? Seita.7G079400 Secondary Identifier:  ? PAC:32702297
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G079400 0.5kb upstream 0.5kb upstream 7570 true scaffold_7: 18353043-18360612 Setaria italica
Seita.7G079400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 18360113-18360612 Setaria italica
Seita.7G079400 0.5kb downstream 0.5kb downstream 7570 true scaffold_7: 18352543-18360112 Setaria italica
Seita.7G079400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 18352543-18353042 Setaria italica
Seita.7G079400 1.0kb upstream 1.0kb upstream 8070 true scaffold_7: 18353043-18361112 Setaria italica
Seita.7G079400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 18360113-18361112 Setaria italica
Seita.7G079400 1.0kb downstream 1.0kb downstream 8070 true scaffold_7: 18352043-18360112 Setaria italica
Seita.7G079400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 18352043-18353042 Setaria italica
Seita.7G079400 2.0kb upstream 2.0kb upstream 9070 true scaffold_7: 18353043-18362112 Setaria italica
Seita.7G079400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 18360113-18362112 Setaria italica
Seita.7G079400 2.0kb downstream 2.0kb downstream 9070 true scaffold_7: 18351043-18360112 Setaria italica
Seita.7G079400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 18351043-18353042 Setaria italica
Seita.7G079400 5.0kb upstream 5.0kb upstream 12070 true scaffold_7: 18353043-18365112 Setaria italica
Seita.7G079400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 18360113-18365112 Setaria italica
Seita.7G079400 5.0kb downstream 5.0kb downstream 12070 true scaffold_7: 18348043-18360112 Setaria italica
Seita.7G079400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 18348043-18353042 Setaria italica
Seita.7G079400 10.0kb upstream 10.0kb upstream 17070 true scaffold_7: 18353043-18370112 Setaria italica
Seita.7G079400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 18360113-18370112 Setaria italica
Seita.7G079400 10.0kb downstream 10.0kb downstream 17070 true scaffold_7: 18343043-18360112 Setaria italica
Seita.7G079400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 18343043-18353042 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180293 5267 Panicoideae View MSA
124581910 5269 Grass View MSA
122047694 5273 Angiosperm View MSA
121345923 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 99.365     High  
cufflinks 44.247     High  
cufflinks 73.683     High  
cufflinks 56.125     High  
cufflinks 83.175     High  
cufflinks 46.182     High  
cufflinks 91.217     High  
cufflinks 85.839     High  
cufflinks 178.082     High High
cufflinks 28.62     High Low
cufflinks 64.898     High  
cufflinks 38.11     High  
cufflinks 30.894     High Low
cufflinks 68.953     High  
cufflinks 34.264     High Low
cufflinks 94.645     High  
cufflinks 31.175     High Low
cufflinks 144.829     High High
cufflinks 53.845     High  
cufflinks 29.032     High Low

0 Strain