Gene : Seita.7G079600 S. italica v2.2
Defline:  (1 of 3) PTHR11638//PTHR11638:SF96 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  796
Name:  ? Seita.7G079600 Secondary Identifier:  ? PAC:32703767
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G079600 0.5kb upstream 0.5kb upstream 7060 true scaffold_7: 18363048-18370107 Setaria italica
Seita.7G079600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 18369608-18370107 Setaria italica
Seita.7G079600 0.5kb downstream 0.5kb downstream 7060 true scaffold_7: 18362548-18369607 Setaria italica
Seita.7G079600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 18362548-18363047 Setaria italica
Seita.7G079600 1.0kb upstream 1.0kb upstream 7560 true scaffold_7: 18363048-18370607 Setaria italica
Seita.7G079600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 18369608-18370607 Setaria italica
Seita.7G079600 1.0kb downstream 1.0kb downstream 7560 true scaffold_7: 18362048-18369607 Setaria italica
Seita.7G079600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 18362048-18363047 Setaria italica
Seita.7G079600 2.0kb upstream 2.0kb upstream 8560 true scaffold_7: 18363048-18371607 Setaria italica
Seita.7G079600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 18369608-18371607 Setaria italica
Seita.7G079600 2.0kb downstream 2.0kb downstream 8560 true scaffold_7: 18361048-18369607 Setaria italica
Seita.7G079600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 18361048-18363047 Setaria italica
Seita.7G079600 5.0kb upstream 5.0kb upstream 11560 true scaffold_7: 18363048-18374607 Setaria italica
Seita.7G079600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 18369608-18374607 Setaria italica
Seita.7G079600 5.0kb downstream 5.0kb downstream 11560 true scaffold_7: 18358048-18369607 Setaria italica
Seita.7G079600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 18358048-18363047 Setaria italica
Seita.7G079600 10.0kb upstream 10.0kb upstream 16560 true scaffold_7: 18363048-18379607 Setaria italica
Seita.7G079600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 18369608-18379607 Setaria italica
Seita.7G079600 10.0kb downstream 10.0kb downstream 16560 true scaffold_7: 18353048-18369607 Setaria italica
Seita.7G079600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 18353048-18363047 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122116408 5267 Panicoideae View MSA
124581910 5269 Grass View MSA
122047694 5273 Angiosperm View MSA
121345923 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 58.482     High High
cufflinks 32.859     High  
cufflinks 39.055     High  
cufflinks 26.569     High Low
cufflinks 39.503     High  
cufflinks 36.376     High  
cufflinks 49.976     High  
cufflinks 47.314     High  
cufflinks 90.282     High High
cufflinks 20.94     High Low
cufflinks 42.519     High  
cufflinks 34.367     High  
cufflinks 25.849     High Low
cufflinks 47.251     High  
cufflinks 32.266     High  
cufflinks 58.589     High High
cufflinks 30.299     High  
cufflinks 65.809     High High
cufflinks 30.314     High  
cufflinks 31.307     High  

0 Strain