Gene : Seita.7G090800 S. italica v2.2
Defline:  (1 of 1) KOG1985 - Vesicle coat complex COPII, subunit SEC24/subunit SFB2 Genomic Order:  908
Name:  ? Seita.7G090800 Secondary Identifier:  ? PAC:32703663
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G090800 0.5kb upstream 0.5kb upstream 7747 true scaffold_7: 19444599-19452345 Setaria italica
Seita.7G090800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 19444599-19445098 Setaria italica
Seita.7G090800 0.5kb downstream 0.5kb downstream 7747 true scaffold_7: 19445099-19452845 Setaria italica
Seita.7G090800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 19452346-19452845 Setaria italica
Seita.7G090800 1.0kb upstream 1.0kb upstream 8247 true scaffold_7: 19444099-19452345 Setaria italica
Seita.7G090800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 19444099-19445098 Setaria italica
Seita.7G090800 1.0kb downstream 1.0kb downstream 8247 true scaffold_7: 19445099-19453345 Setaria italica
Seita.7G090800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 19452346-19453345 Setaria italica
Seita.7G090800 2.0kb upstream 2.0kb upstream 9247 true scaffold_7: 19443099-19452345 Setaria italica
Seita.7G090800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 19443099-19445098 Setaria italica
Seita.7G090800 2.0kb downstream 2.0kb downstream 9247 true scaffold_7: 19445099-19454345 Setaria italica
Seita.7G090800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 19452346-19454345 Setaria italica
Seita.7G090800 5.0kb upstream 5.0kb upstream 12247 true scaffold_7: 19440099-19452345 Setaria italica
Seita.7G090800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 19440099-19445098 Setaria italica
Seita.7G090800 5.0kb downstream 5.0kb downstream 12247 true scaffold_7: 19445099-19457345 Setaria italica
Seita.7G090800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 19452346-19457345 Setaria italica
Seita.7G090800 10.0kb upstream 10.0kb upstream 17247 true scaffold_7: 19435099-19452345 Setaria italica
Seita.7G090800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 19435099-19445098 Setaria italica
Seita.7G090800 10.0kb downstream 10.0kb downstream 17247 true scaffold_7: 19445099-19462345 Setaria italica
Seita.7G090800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 19452346-19462345 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182148 5267 Panicoideae View MSA
124572788 5269 Grass View MSA
122042222 5273 Angiosperm View MSA
121345983 5274 Embryophyte View MSA
123428151 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.267        
cufflinks 4.269       High
cufflinks 0.549       Low
cufflinks 0.192       Low
cufflinks 0.197       Low
cufflinks 3.667        
cufflinks 2.175        
cufflinks 2.213        
cufflinks 1.401        
cufflinks 3.612        
cufflinks 3.203        
cufflinks 2.825        
cufflinks 1.621        
cufflinks 1.362        
cufflinks 3.677        
cufflinks 1.332        
cufflinks 3.361        
cufflinks 0.671        
cufflinks 0.466       Low
cufflinks 4.158        

0 Strain