Gene : Seita.7G106200 S. italica v2.2
Defline:  (1 of 1) PTHR30060 - INNER MEMBRANE PROTEIN Genomic Order:  1062
Name:  ? Seita.7G106200 Secondary Identifier:  ? PAC:32703315
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G106200 0.5kb upstream 0.5kb upstream 3509 true scaffold_7: 20746229-20749737 Setaria italica
Seita.7G106200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 20749238-20749737 Setaria italica
Seita.7G106200 0.5kb downstream 0.5kb downstream 3509 true scaffold_7: 20745729-20749237 Setaria italica
Seita.7G106200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 20745729-20746228 Setaria italica
Seita.7G106200 1.0kb upstream 1.0kb upstream 4009 true scaffold_7: 20746229-20750237 Setaria italica
Seita.7G106200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 20749238-20750237 Setaria italica
Seita.7G106200 1.0kb downstream 1.0kb downstream 4009 true scaffold_7: 20745229-20749237 Setaria italica
Seita.7G106200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 20745229-20746228 Setaria italica
Seita.7G106200 2.0kb upstream 2.0kb upstream 5009 true scaffold_7: 20746229-20751237 Setaria italica
Seita.7G106200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 20749238-20751237 Setaria italica
Seita.7G106200 2.0kb downstream 2.0kb downstream 5009 true scaffold_7: 20744229-20749237 Setaria italica
Seita.7G106200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 20744229-20746228 Setaria italica
Seita.7G106200 5.0kb upstream 5.0kb upstream 8009 true scaffold_7: 20746229-20754237 Setaria italica
Seita.7G106200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 20749238-20754237 Setaria italica
Seita.7G106200 5.0kb downstream 5.0kb downstream 8009 true scaffold_7: 20741229-20749237 Setaria italica
Seita.7G106200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 20741229-20746228 Setaria italica
Seita.7G106200 10.0kb upstream 10.0kb upstream 13009 true scaffold_7: 20746229-20759237 Setaria italica
Seita.7G106200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 20749238-20759237 Setaria italica
Seita.7G106200 10.0kb downstream 10.0kb downstream 13009 true scaffold_7: 20736229-20749237 Setaria italica
Seita.7G106200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 20736229-20746228 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184438 5267 Panicoideae View MSA
124588867 5269 Grass View MSA
122042336 5273 Angiosperm View MSA
121346143 5274 Embryophyte View MSA
123426491 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.721        
cufflinks 8.599        
cufflinks 8.499        
cufflinks 10.081        
cufflinks 9.853        
cufflinks 8.408        
cufflinks 9.411        
cufflinks 9.984        
cufflinks 8.729        
cufflinks 6.414       Low
cufflinks 9.17        
cufflinks 16.066     High High
cufflinks 12.41       High
cufflinks 8.837        
cufflinks 14.032       High
cufflinks 8.679        
cufflinks 13.344       High
cufflinks 11.367     High  
cufflinks 10.131        
cufflinks 10.462        

0 Strain