Gene : Seita.7G067200 S. italica v2.2
Defline:  (1 of 1) PTHR33970:SF1 - VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC Genomic Order:  672
Name:  ? Seita.7G067200 Secondary Identifier:  ? PAC:32705840
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CAROTENOID-PWY Setaria italica pathologic  
Sitalica PWY-5945 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G067200 0.5kb upstream 0.5kb upstream 3350 true scaffold_7: 17025118-17028467 Setaria italica
Seita.7G067200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 17027968-17028467 Setaria italica
Seita.7G067200 0.5kb downstream 0.5kb downstream 3350 true scaffold_7: 17024618-17027967 Setaria italica
Seita.7G067200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 17024618-17025117 Setaria italica
Seita.7G067200 1.0kb upstream 1.0kb upstream 3850 true scaffold_7: 17025118-17028967 Setaria italica
Seita.7G067200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 17027968-17028967 Setaria italica
Seita.7G067200 1.0kb downstream 1.0kb downstream 3850 true scaffold_7: 17024118-17027967 Setaria italica
Seita.7G067200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 17024118-17025117 Setaria italica
Seita.7G067200 2.0kb upstream 2.0kb upstream 4850 true scaffold_7: 17025118-17029967 Setaria italica
Seita.7G067200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 17027968-17029967 Setaria italica
Seita.7G067200 2.0kb downstream 2.0kb downstream 4850 true scaffold_7: 17023118-17027967 Setaria italica
Seita.7G067200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 17023118-17025117 Setaria italica
Seita.7G067200 5.0kb upstream 5.0kb upstream 7850 true scaffold_7: 17025118-17032967 Setaria italica
Seita.7G067200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 17027968-17032967 Setaria italica
Seita.7G067200 5.0kb downstream 5.0kb downstream 7850 true scaffold_7: 17020118-17027967 Setaria italica
Seita.7G067200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 17020118-17025117 Setaria italica
Seita.7G067200 10.0kb upstream 10.0kb upstream 12850 true scaffold_7: 17025118-17037967 Setaria italica
Seita.7G067200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 17027968-17037967 Setaria italica
Seita.7G067200 10.0kb downstream 10.0kb downstream 12850 true scaffold_7: 17015118-17027967 Setaria italica
Seita.7G067200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 17015118-17025117 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185590 5267 Panicoideae View MSA
124577398 5269 Grass View MSA
122041813 5273 Angiosperm View MSA
121344367 5274 Embryophyte View MSA
123425421 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.671     High  
cufflinks 9.725        
cufflinks 49.721     High  
cufflinks 56.263     High  
cufflinks 93.93     High High
cufflinks 11.382        
cufflinks 34.027     High  
cufflinks 53.461     High  
cufflinks 90.063     High High
cufflinks 2.086        
cufflinks 6.553        
cufflinks 0.866       Low
cufflinks 1.173       Low
cufflinks 25.678     High  
cufflinks 0.336       Low
cufflinks 42.505     High  
cufflinks 0.611       Low
cufflinks 11.535     High  
cufflinks 30.85     High  
cufflinks 0.473       Low

0 Strain