Gene : Seita.7G153000 S. italica v2.2
Defline:  (1 of 1) PTHR12866:SF5 - UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10 Genomic Order:  1530
Name:  ? Seita.7G153000 Secondary Identifier:  ? PAC:32703646
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G153000 0.5kb upstream 0.5kb upstream 2543 true scaffold_7: 23902320-23904862 Setaria italica
Seita.7G153000 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 23904363-23904862 Setaria italica
Seita.7G153000 0.5kb downstream 0.5kb downstream 2543 true scaffold_7: 23901820-23904362 Setaria italica
Seita.7G153000 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 23901820-23902319 Setaria italica
Seita.7G153000 1.0kb upstream 1.0kb upstream 3043 true scaffold_7: 23902320-23905362 Setaria italica
Seita.7G153000 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 23904363-23905362 Setaria italica
Seita.7G153000 1.0kb downstream 1.0kb downstream 3043 true scaffold_7: 23901320-23904362 Setaria italica
Seita.7G153000 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 23901320-23902319 Setaria italica
Seita.7G153000 2.0kb upstream 2.0kb upstream 4043 true scaffold_7: 23902320-23906362 Setaria italica
Seita.7G153000 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 23904363-23906362 Setaria italica
Seita.7G153000 2.0kb downstream 2.0kb downstream 4043 true scaffold_7: 23900320-23904362 Setaria italica
Seita.7G153000 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 23900320-23902319 Setaria italica
Seita.7G153000 5.0kb upstream 5.0kb upstream 7043 true scaffold_7: 23902320-23909362 Setaria italica
Seita.7G153000 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 23904363-23909362 Setaria italica
Seita.7G153000 5.0kb downstream 5.0kb downstream 7043 true scaffold_7: 23897320-23904362 Setaria italica
Seita.7G153000 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 23897320-23902319 Setaria italica
Seita.7G153000 10.0kb upstream 10.0kb upstream 12043 true scaffold_7: 23902320-23914362 Setaria italica
Seita.7G153000 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 23904363-23914362 Setaria italica
Seita.7G153000 10.0kb downstream 10.0kb downstream 12043 true scaffold_7: 23892320-23904362 Setaria italica
Seita.7G153000 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 23892320-23902319 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185940 5267 Panicoideae View MSA
124579019 5269 Grass View MSA
122045044 5273 Angiosperm View MSA
121344822 5274 Embryophyte View MSA
123380107 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.046        
cufflinks 2.523        
cufflinks 3.647        
cufflinks 4.559       High
cufflinks 3.4        
cufflinks 2.493        
cufflinks 2.92        
cufflinks 3.344        
cufflinks 2.329       Low
cufflinks 2.408       Low
cufflinks 2.232       Low
cufflinks 2.966        
cufflinks 2.87        
cufflinks 3.025        
cufflinks 3.445        
cufflinks 4.322       High
cufflinks 3.766        
cufflinks 2.358       Low
cufflinks 4.38       High
cufflinks 3.092        

0 Strain