Gene : Seita.7G161800 S. italica v2.2
Defline:  (1 of 1) PTHR12695 - GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 Genomic Order:  1618
Name:  ? Seita.7G161800 Secondary Identifier:  ? PAC:32702134
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G161800 0.5kb upstream 0.5kb upstream 4901 true scaffold_7: 24542629-24547529 Setaria italica
Seita.7G161800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 24547030-24547529 Setaria italica
Seita.7G161800 0.5kb downstream 0.5kb downstream 4901 true scaffold_7: 24542129-24547029 Setaria italica
Seita.7G161800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 24542129-24542628 Setaria italica
Seita.7G161800 1.0kb upstream 1.0kb upstream 5401 true scaffold_7: 24542629-24548029 Setaria italica
Seita.7G161800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 24547030-24548029 Setaria italica
Seita.7G161800 1.0kb downstream 1.0kb downstream 5401 true scaffold_7: 24541629-24547029 Setaria italica
Seita.7G161800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 24541629-24542628 Setaria italica
Seita.7G161800 2.0kb upstream 2.0kb upstream 6401 true scaffold_7: 24542629-24549029 Setaria italica
Seita.7G161800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 24547030-24549029 Setaria italica
Seita.7G161800 2.0kb downstream 2.0kb downstream 6401 true scaffold_7: 24540629-24547029 Setaria italica
Seita.7G161800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 24540629-24542628 Setaria italica
Seita.7G161800 5.0kb upstream 5.0kb upstream 9401 true scaffold_7: 24542629-24552029 Setaria italica
Seita.7G161800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 24547030-24552029 Setaria italica
Seita.7G161800 5.0kb downstream 5.0kb downstream 9401 true scaffold_7: 24537629-24547029 Setaria italica
Seita.7G161800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 24537629-24542628 Setaria italica
Seita.7G161800 10.0kb upstream 10.0kb upstream 14401 true scaffold_7: 24542629-24557029 Setaria italica
Seita.7G161800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 24547030-24557029 Setaria italica
Seita.7G161800 10.0kb downstream 10.0kb downstream 14401 true scaffold_7: 24532629-24547029 Setaria italica
Seita.7G161800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 24532629-24542628 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183508 5267 Panicoideae View MSA
124570380 5269 Grass View MSA
122046479 5273 Angiosperm View MSA
121344622 5274 Embryophyte View MSA
123424882 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.32       High
cufflinks 4.341        
cufflinks 1.832       Low
cufflinks 1.902       Low
cufflinks 2.405        
cufflinks 5.1       High
cufflinks 2.976        
cufflinks 2.878        
cufflinks 3.074        
cufflinks 4.831       High
cufflinks 3.801        
cufflinks 4.561        
cufflinks 3.811        
cufflinks 1.81       Low
cufflinks 3.457        
cufflinks 2.948        
cufflinks 4.94       High
cufflinks 2.985        
cufflinks 1.704       Low
cufflinks 4.349        

0 Strain