Gene : Seita.7G161100 S. italica v2.2
Defline:  (1 of 1) PTHR11822:SF5 - ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1611
Name:  ? Seita.7G161100 Secondary Identifier:  ? PAC:32705689
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6549 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G161100 0.5kb upstream 0.5kb upstream 6007 true scaffold_7: 24502367-24508373 Setaria italica
Seita.7G161100 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 24502367-24502866 Setaria italica
Seita.7G161100 0.5kb downstream 0.5kb downstream 6007 true scaffold_7: 24502867-24508873 Setaria italica
Seita.7G161100 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 24508374-24508873 Setaria italica
Seita.7G161100 1.0kb upstream 1.0kb upstream 6507 true scaffold_7: 24501867-24508373 Setaria italica
Seita.7G161100 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 24501867-24502866 Setaria italica
Seita.7G161100 1.0kb downstream 1.0kb downstream 6507 true scaffold_7: 24502867-24509373 Setaria italica
Seita.7G161100 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 24508374-24509373 Setaria italica
Seita.7G161100 2.0kb upstream 2.0kb upstream 7507 true scaffold_7: 24500867-24508373 Setaria italica
Seita.7G161100 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 24500867-24502866 Setaria italica
Seita.7G161100 2.0kb downstream 2.0kb downstream 7507 true scaffold_7: 24502867-24510373 Setaria italica
Seita.7G161100 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 24508374-24510373 Setaria italica
Seita.7G161100 5.0kb upstream 5.0kb upstream 10507 true scaffold_7: 24497867-24508373 Setaria italica
Seita.7G161100 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 24497867-24502866 Setaria italica
Seita.7G161100 5.0kb downstream 5.0kb downstream 10507 true scaffold_7: 24502867-24513373 Setaria italica
Seita.7G161100 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 24508374-24513373 Setaria italica
Seita.7G161100 10.0kb upstream 10.0kb upstream 15507 true scaffold_7: 24492867-24508373 Setaria italica
Seita.7G161100 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 24492867-24502866 Setaria italica
Seita.7G161100 10.0kb downstream 10.0kb downstream 15507 true scaffold_7: 24502867-24518373 Setaria italica
Seita.7G161100 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 24508374-24518373 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041513 5273 Angiosperm View MSA
122177673 5267 Panicoideae View MSA
124588618 5269 Grass View MSA
121349846 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.253        
cufflinks 7.17       Low
cufflinks 8.952        
cufflinks 7.649        
cufflinks 9.866        
cufflinks 7.278       Low
cufflinks 8.836        
cufflinks 13.279        
cufflinks 18.537     High High
cufflinks 8.181        
cufflinks 8.672        
cufflinks 12.226        
cufflinks 10.473        
cufflinks 11.799        
cufflinks 9.734        
cufflinks 9.855        
cufflinks 13.518        
cufflinks 17.626     High High
cufflinks 5.918       Low
cufflinks 11.08        

0 Strain