Gene : Seita.7G166900 S. italica v2.2
Defline:  (1 of 3) 4.1.2.5 - L-threonine aldolase / L-threonine acetaldehyde-lyase Genomic Order:  1669
Name:  ? Seita.7G166900 Secondary Identifier:  ? PAC:32703143
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G166900 0.5kb upstream 0.5kb upstream 4235 true scaffold_7: 24902623-24906857 Setaria italica
Seita.7G166900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 24906358-24906857 Setaria italica
Seita.7G166900 0.5kb downstream 0.5kb downstream 4235 true scaffold_7: 24902123-24906357 Setaria italica
Seita.7G166900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 24902123-24902622 Setaria italica
Seita.7G166900 1.0kb upstream 1.0kb upstream 4735 true scaffold_7: 24902623-24907357 Setaria italica
Seita.7G166900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 24906358-24907357 Setaria italica
Seita.7G166900 1.0kb downstream 1.0kb downstream 4735 true scaffold_7: 24901623-24906357 Setaria italica
Seita.7G166900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 24901623-24902622 Setaria italica
Seita.7G166900 2.0kb upstream 2.0kb upstream 5735 true scaffold_7: 24902623-24908357 Setaria italica
Seita.7G166900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 24906358-24908357 Setaria italica
Seita.7G166900 2.0kb downstream 2.0kb downstream 5735 true scaffold_7: 24900623-24906357 Setaria italica
Seita.7G166900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 24900623-24902622 Setaria italica
Seita.7G166900 5.0kb upstream 5.0kb upstream 8735 true scaffold_7: 24902623-24911357 Setaria italica
Seita.7G166900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 24906358-24911357 Setaria italica
Seita.7G166900 5.0kb downstream 5.0kb downstream 8735 true scaffold_7: 24897623-24906357 Setaria italica
Seita.7G166900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 24897623-24902622 Setaria italica
Seita.7G166900 10.0kb upstream 10.0kb upstream 13735 true scaffold_7: 24902623-24916357 Setaria italica
Seita.7G166900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 24906358-24916357 Setaria italica
Seita.7G166900 10.0kb downstream 10.0kb downstream 13735 true scaffold_7: 24892623-24906357 Setaria italica
Seita.7G166900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 24892623-24902622 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192967 5267 Panicoideae View MSA
124466428 5269 Grass View MSA
122044905 5273 Angiosperm View MSA
121345445 5274 Embryophyte View MSA
123424169 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.04       High
cufflinks 1.994       Low
cufflinks 1.789       Low
cufflinks 1.445       Low
cufflinks 1.995       Low
cufflinks 2.325       Low
cufflinks 4.933        
cufflinks 4.701        
cufflinks 5.436        
cufflinks 8.977        
cufflinks 9.51        
cufflinks 7.881        
cufflinks 7.265        
cufflinks 3.846        
cufflinks 14.397     High High
cufflinks 3.513        
cufflinks 9.757        
cufflinks 5.264        
cufflinks 2.608        
cufflinks 11.217       High

0 Strain