Gene : Seita.7G171300 S. italica v2.2
Defline:  (1 of 6) PF05757 - Oxygen evolving enhancer protein 3 (PsbQ) (PsbQ) Genomic Order:  1713
Name:  ? Seita.7G171300 Secondary Identifier:  ? PAC:32705577
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G171300 0.5kb upstream 0.5kb upstream 5358 true scaffold_7: 25289794-25295151 Setaria italica
Seita.7G171300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 25289794-25290293 Setaria italica
Seita.7G171300 0.5kb downstream 0.5kb downstream 5358 true scaffold_7: 25290294-25295651 Setaria italica
Seita.7G171300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 25295152-25295651 Setaria italica
Seita.7G171300 1.0kb upstream 1.0kb upstream 5858 true scaffold_7: 25289294-25295151 Setaria italica
Seita.7G171300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 25289294-25290293 Setaria italica
Seita.7G171300 1.0kb downstream 1.0kb downstream 5858 true scaffold_7: 25290294-25296151 Setaria italica
Seita.7G171300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 25295152-25296151 Setaria italica
Seita.7G171300 2.0kb upstream 2.0kb upstream 6858 true scaffold_7: 25288294-25295151 Setaria italica
Seita.7G171300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 25288294-25290293 Setaria italica
Seita.7G171300 2.0kb downstream 2.0kb downstream 6858 true scaffold_7: 25290294-25297151 Setaria italica
Seita.7G171300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 25295152-25297151 Setaria italica
Seita.7G171300 5.0kb upstream 5.0kb upstream 9858 true scaffold_7: 25285294-25295151 Setaria italica
Seita.7G171300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 25285294-25290293 Setaria italica
Seita.7G171300 5.0kb downstream 5.0kb downstream 9858 true scaffold_7: 25290294-25300151 Setaria italica
Seita.7G171300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 25295152-25300151 Setaria italica
Seita.7G171300 10.0kb upstream 10.0kb upstream 14858 true scaffold_7: 25280294-25295151 Setaria italica
Seita.7G171300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 25280294-25290293 Setaria italica
Seita.7G171300 10.0kb downstream 10.0kb downstream 14858 true scaffold_7: 25290294-25305151 Setaria italica
Seita.7G171300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 25295152-25305151 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191196 5267 Panicoideae View MSA
124588669 5269 Grass View MSA
122049386 5273 Angiosperm View MSA
121311379 5274 Embryophyte View MSA
123348684 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.45        
cufflinks 0.264       Low
cufflinks 0.285        
cufflinks 0.362        
cufflinks 0.352        
cufflinks 0.26       Low
cufflinks 0.251       Low
cufflinks 0.549        
cufflinks 0.311        
cufflinks 0.489        
cufflinks 0.518        
cufflinks 1.586       High
cufflinks 1.411       High
cufflinks 2.097       High
cufflinks 0.811        
cufflinks 0.281        
cufflinks 1.254       High
cufflinks 1.548       High
cufflinks 0.601        
cufflinks 0.461        

0 Strain