Gene : Seita.7G177900 S. italica v2.2
Defline:  (1 of 2) PTHR12313//PTHR12313:SF9 - RNF5 Genomic Order:  1779
Name:  ? Seita.7G177900 Secondary Identifier:  ? PAC:32705468
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G177900 0.5kb upstream 0.5kb upstream 4250 true scaffold_7: 25700887-25705136 Setaria italica
Seita.7G177900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 25704637-25705136 Setaria italica
Seita.7G177900 0.5kb downstream 0.5kb downstream 4250 true scaffold_7: 25700387-25704636 Setaria italica
Seita.7G177900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 25700387-25700886 Setaria italica
Seita.7G177900 1.0kb upstream 1.0kb upstream 4750 true scaffold_7: 25700887-25705636 Setaria italica
Seita.7G177900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 25704637-25705636 Setaria italica
Seita.7G177900 1.0kb downstream 1.0kb downstream 4750 true scaffold_7: 25699887-25704636 Setaria italica
Seita.7G177900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 25699887-25700886 Setaria italica
Seita.7G177900 2.0kb upstream 2.0kb upstream 5750 true scaffold_7: 25700887-25706636 Setaria italica
Seita.7G177900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 25704637-25706636 Setaria italica
Seita.7G177900 2.0kb downstream 2.0kb downstream 5750 true scaffold_7: 25698887-25704636 Setaria italica
Seita.7G177900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 25698887-25700886 Setaria italica
Seita.7G177900 5.0kb upstream 5.0kb upstream 8750 true scaffold_7: 25700887-25709636 Setaria italica
Seita.7G177900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 25704637-25709636 Setaria italica
Seita.7G177900 5.0kb downstream 5.0kb downstream 8750 true scaffold_7: 25695887-25704636 Setaria italica
Seita.7G177900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 25695887-25700886 Setaria italica
Seita.7G177900 10.0kb upstream 10.0kb upstream 13750 true scaffold_7: 25700887-25714636 Setaria italica
Seita.7G177900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 25704637-25714636 Setaria italica
Seita.7G177900 10.0kb downstream 10.0kb downstream 13750 true scaffold_7: 25690887-25704636 Setaria italica
Seita.7G177900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 25690887-25700886 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193658 5267 Panicoideae View MSA
124591154 5269 Grass View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.344     High High
cufflinks 10.343       Low
cufflinks 13.261     High  
cufflinks 11.167     High  
cufflinks 10.88     High  
cufflinks 13.701     High  
cufflinks 11.045        
cufflinks 18.062     High  
cufflinks 13.498     High  
cufflinks 17.276     High  
cufflinks 17.017     High  
cufflinks 34.498     High High
cufflinks 22.023     High High
cufflinks 9.152       Low
cufflinks 11.0        
cufflinks 13.209     High  
cufflinks 16.197     High  
cufflinks 26.417     High High
cufflinks 10.266       Low
cufflinks 14.323        

0 Strain