Gene : Seita.7G119700 S. italica v2.2
Defline:  (1 of 1) PTHR23160:SF3 - SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED Genomic Order:  1197
Name:  ? Seita.7G119700 Secondary Identifier:  ? PAC:32705553
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G119700 0.5kb upstream 0.5kb upstream 10261 true scaffold_7: 21643817-21654077 Setaria italica
Seita.7G119700 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 21643817-21644316 Setaria italica
Seita.7G119700 0.5kb downstream 0.5kb downstream 10261 true scaffold_7: 21644317-21654577 Setaria italica
Seita.7G119700 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 21654078-21654577 Setaria italica
Seita.7G119700 1.0kb upstream 1.0kb upstream 10761 true scaffold_7: 21643317-21654077 Setaria italica
Seita.7G119700 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 21643317-21644316 Setaria italica
Seita.7G119700 1.0kb downstream 1.0kb downstream 10761 true scaffold_7: 21644317-21655077 Setaria italica
Seita.7G119700 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 21654078-21655077 Setaria italica
Seita.7G119700 2.0kb upstream 2.0kb upstream 11761 true scaffold_7: 21642317-21654077 Setaria italica
Seita.7G119700 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 21642317-21644316 Setaria italica
Seita.7G119700 2.0kb downstream 2.0kb downstream 11761 true scaffold_7: 21644317-21656077 Setaria italica
Seita.7G119700 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 21654078-21656077 Setaria italica
Seita.7G119700 5.0kb upstream 5.0kb upstream 14761 true scaffold_7: 21639317-21654077 Setaria italica
Seita.7G119700 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 21639317-21644316 Setaria italica
Seita.7G119700 5.0kb downstream 5.0kb downstream 14761 true scaffold_7: 21644317-21659077 Setaria italica
Seita.7G119700 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 21654078-21659077 Setaria italica
Seita.7G119700 10.0kb upstream 10.0kb upstream 19761 true scaffold_7: 21634317-21654077 Setaria italica
Seita.7G119700 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 21634317-21644316 Setaria italica
Seita.7G119700 10.0kb downstream 10.0kb downstream 19761 true scaffold_7: 21644317-21664077 Setaria italica
Seita.7G119700 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 21654078-21664077 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181562 5267 Panicoideae View MSA
124580617 5269 Grass View MSA
122042808 5273 Angiosperm View MSA
121349481 5274 Embryophyte View MSA
123381327 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.216        
cufflinks 0.574       High
cufflinks 0.048     Low Low
cufflinks 0.028     Low Low
cufflinks 0.021     Low Low
cufflinks 0.608       High
cufflinks 0.207        
cufflinks 0.51       High
cufflinks 0.226        
cufflinks 0.174     Low  
cufflinks 0.237        
cufflinks 0.229        
cufflinks 0.223        
cufflinks 0.042     Low Low
cufflinks 0.242        
cufflinks 0.086     Low  
cufflinks 0.416        
cufflinks 0.065     Low  
cufflinks 0.049     Low Low
cufflinks 0.315        

0 Strain