Gene : Seita.7G250200 S. italica v2.2
Genomic Order:  2502 Name:  ? Seita.7G250200
Secondary Identifier:  ? PAC:32702198
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G250200 0.5kb upstream 0.5kb upstream 4348 true scaffold_7: 30756473-30760820 Setaria italica
Seita.7G250200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 30756473-30756972 Setaria italica
Seita.7G250200 0.5kb downstream 0.5kb downstream 4348 true scaffold_7: 30756973-30761320 Setaria italica
Seita.7G250200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 30760821-30761320 Setaria italica
Seita.7G250200 1.0kb upstream 1.0kb upstream 4848 true scaffold_7: 30755973-30760820 Setaria italica
Seita.7G250200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 30755973-30756972 Setaria italica
Seita.7G250200 1.0kb downstream 1.0kb downstream 4848 true scaffold_7: 30756973-30761820 Setaria italica
Seita.7G250200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 30760821-30761820 Setaria italica
Seita.7G250200 2.0kb upstream 2.0kb upstream 5848 true scaffold_7: 30754973-30760820 Setaria italica
Seita.7G250200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 30754973-30756972 Setaria italica
Seita.7G250200 2.0kb downstream 2.0kb downstream 5848 true scaffold_7: 30756973-30762820 Setaria italica
Seita.7G250200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 30760821-30762820 Setaria italica
Seita.7G250200 5.0kb upstream 5.0kb upstream 8848 true scaffold_7: 30751973-30760820 Setaria italica
Seita.7G250200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 30751973-30756972 Setaria italica
Seita.7G250200 5.0kb downstream 5.0kb downstream 8848 true scaffold_7: 30756973-30765820 Setaria italica
Seita.7G250200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 30760821-30765820 Setaria italica
Seita.7G250200 10.0kb upstream 10.0kb upstream 13848 true scaffold_7: 30746973-30760820 Setaria italica
Seita.7G250200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 30746973-30756972 Setaria italica
Seita.7G250200 10.0kb downstream 10.0kb downstream 13848 true scaffold_7: 30756973-30770820 Setaria italica
Seita.7G250200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 30760821-30770820 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122054581 5267 Panicoideae Singleton cluster - no MSA
124590909 5269 Grass View MSA
122050080 5273 Angiosperm View MSA
121311726 5274 Embryophyte View MSA
123348985 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.857     High  
cufflinks 33.443     High High
cufflinks 10.908     High Low
cufflinks 7.4       Low
cufflinks 10.376       Low
cufflinks 30.238     High High
cufflinks 35.686     High High
cufflinks 22.232     High  
cufflinks 18.535     High  
cufflinks 15.416        
cufflinks 22.738     High  
cufflinks 13.682     High  
cufflinks 17.636     High  
cufflinks 14.629     High  
cufflinks 20.505     High  
cufflinks 35.062     High High
cufflinks 17.903     High  
cufflinks 22.513     High  
cufflinks 11.465     High Low
cufflinks 18.504     High  

0 Strain