Gene : Seita.7G254500 S. italica v2.2
Defline:  (1 of 1) KOG1781 - Small Nuclear ribonucleoprotein splicing factor Genomic Order:  2545
Name:  ? Seita.7G254500 Secondary Identifier:  ? PAC:32703139
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G254500 0.5kb upstream 0.5kb upstream 2936 true scaffold_7: 31037781-31040716 Setaria italica
Seita.7G254500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 31040217-31040716 Setaria italica
Seita.7G254500 0.5kb downstream 0.5kb downstream 2936 true scaffold_7: 31037281-31040216 Setaria italica
Seita.7G254500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 31037281-31037780 Setaria italica
Seita.7G254500 1.0kb upstream 1.0kb upstream 3436 true scaffold_7: 31037781-31041216 Setaria italica
Seita.7G254500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 31040217-31041216 Setaria italica
Seita.7G254500 1.0kb downstream 1.0kb downstream 3436 true scaffold_7: 31036781-31040216 Setaria italica
Seita.7G254500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 31036781-31037780 Setaria italica
Seita.7G254500 2.0kb upstream 2.0kb upstream 4436 true scaffold_7: 31037781-31042216 Setaria italica
Seita.7G254500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 31040217-31042216 Setaria italica
Seita.7G254500 2.0kb downstream 2.0kb downstream 4436 true scaffold_7: 31035781-31040216 Setaria italica
Seita.7G254500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 31035781-31037780 Setaria italica
Seita.7G254500 5.0kb upstream 5.0kb upstream 7436 true scaffold_7: 31037781-31045216 Setaria italica
Seita.7G254500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 31040217-31045216 Setaria italica
Seita.7G254500 5.0kb downstream 5.0kb downstream 7436 true scaffold_7: 31032781-31040216 Setaria italica
Seita.7G254500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 31032781-31037780 Setaria italica
Seita.7G254500 10.0kb upstream 10.0kb upstream 12436 true scaffold_7: 31037781-31050216 Setaria italica
Seita.7G254500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 31040217-31050216 Setaria italica
Seita.7G254500 10.0kb downstream 10.0kb downstream 12436 true scaffold_7: 31027781-31040216 Setaria italica
Seita.7G254500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 31027781-31037780 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189734 5267 Panicoideae View MSA
124569098 5269 Grass View MSA
122051368 5273 Angiosperm View MSA
121349484 5274 Embryophyte View MSA
123423999 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.097        
cufflinks 22.545     High High
cufflinks 9.95       Low
cufflinks 11.574     High  
cufflinks 10.21        
cufflinks 26.547     High High
cufflinks 12.667        
cufflinks 18.148     High  
cufflinks 14.255     High  
cufflinks 19.573     High  
cufflinks 11.503        
cufflinks 16.838     High  
cufflinks 19.863     High  
cufflinks 16.086     High  
cufflinks 17.174     High  
cufflinks 6.997       Low
cufflinks 20.225     High  
cufflinks 8.166       Low
cufflinks 10.459        
cufflinks 19.334     High  

0 Strain