Gene : Seita.7G199400 S. italica v2.2
Defline:  (1 of 1) PTHR10796 - PATCHED-RELATED Genomic Order:  1994
Name:  ? Seita.7G199400 Secondary Identifier:  ? PAC:32704390
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G199400 0.5kb upstream 0.5kb upstream 19232 true scaffold_7: 27177373-27196604 Setaria italica
Seita.7G199400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 27196105-27196604 Setaria italica
Seita.7G199400 0.5kb downstream 0.5kb downstream 19232 true scaffold_7: 27176873-27196104 Setaria italica
Seita.7G199400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 27176873-27177372 Setaria italica
Seita.7G199400 1.0kb upstream 1.0kb upstream 19732 true scaffold_7: 27177373-27197104 Setaria italica
Seita.7G199400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 27196105-27197104 Setaria italica
Seita.7G199400 1.0kb downstream 1.0kb downstream 19732 true scaffold_7: 27176373-27196104 Setaria italica
Seita.7G199400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 27176373-27177372 Setaria italica
Seita.7G199400 2.0kb upstream 2.0kb upstream 20732 true scaffold_7: 27177373-27198104 Setaria italica
Seita.7G199400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 27196105-27198104 Setaria italica
Seita.7G199400 2.0kb downstream 2.0kb downstream 20732 true scaffold_7: 27175373-27196104 Setaria italica
Seita.7G199400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 27175373-27177372 Setaria italica
Seita.7G199400 5.0kb upstream 5.0kb upstream 23732 true scaffold_7: 27177373-27201104 Setaria italica
Seita.7G199400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 27196105-27201104 Setaria italica
Seita.7G199400 5.0kb downstream 5.0kb downstream 23732 true scaffold_7: 27172373-27196104 Setaria italica
Seita.7G199400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 27172373-27177372 Setaria italica
Seita.7G199400 10.0kb upstream 10.0kb upstream 28732 true scaffold_7: 27177373-27206104 Setaria italica
Seita.7G199400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 27196105-27206104 Setaria italica
Seita.7G199400 10.0kb downstream 10.0kb downstream 28732 true scaffold_7: 27167373-27196104 Setaria italica
Seita.7G199400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 27167373-27177372 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181536 5267 Panicoideae View MSA
124577659 5269 Grass View MSA
122045765 5273 Angiosperm View MSA
123429105 5275 Viridiplantae View MSA
121349896 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.108       High
cufflinks 10.77       High
cufflinks 1.705       Low
cufflinks 1.44       Low
cufflinks 1.635       Low
cufflinks 8.396        
cufflinks 4.888        
cufflinks 2.988        
cufflinks 3.086        
cufflinks 7.739        
cufflinks 14.782     High High
cufflinks 3.818        
cufflinks 7.962        
cufflinks 1.777       Low
cufflinks 10.127       High
cufflinks 4.418        
cufflinks 4.003        
cufflinks 1.718       Low
cufflinks 3.431        
cufflinks 6.13        

0 Strain